| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119775982
Identifier: 119775982
GI number: 119775982
Start: 3389510
End: 3389872
Strand: Direct
Name: 119775982
Synonym: Sama_2850
Alternate gene names: NA
Gene position: 3389510-3389872 (Clockwise)
Preceding gene: 119775978
Following gene: 119775983
Centisome position: 78.71
GC content: 59.78
Gene sequence:
>363_bases ATGCCTGCTCTTCCATCCTTTGTACGCTTGCTTCCCATACTCTTGCTGGCGCTGCCCATGGCAGGTTTTGGCATTGCCAA ACTGCTTGGTGTTGCCGAGCTGCACCGCGCCTTTCAGGCCATGGCGCTGCCAGCCTGGTTCGGCTACTTTATTGGCGCCG CCGAACTGGCGGCCGGAATTGGGCTCTTGCTGCCGCGCTGGAGCGCTCTGGCCGCCACCGGCTTAATCCCCATCATGCTT GGTGCGGCCGGCTTTCATCTGGTCTTCGATGTGCCCTCGCCCATTCCGGCACTGATCTTTTTGGCGCTGTGTCTCTATAT CATCACCCTGCGCCGCAAAGACGCCATCTGGTATCCCTTCTGA
Upstream 100 bases:
>100_bases AAATCCTGCGAATCATCTTAATAAAAGATAATCAATATATTTAATTTTTTGACTGAAGAATACTTAGACCCTCTCTTATT GACTCAGGGTTTACCATCCC
Downstream 100 bases:
>100_bases CCGCTGGCAATTTCGGTGTTTTCCCTGTGGAAGGGAGTGCCTTGCACTCCCCTTTTTTTTGGTATTCATCCGCCATTCTG TCCCGGATTTTTTGGCCTTT
Product: DoxX
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 120; Mature: 119
Protein sequence:
>120_residues MPALPSFVRLLPILLLALPMAGFGIAKLLGVAELHRAFQAMALPAWFGYFIGAAELAAGIGLLLPRWSALAATGLIPIML GAAGFHLVFDVPSPIPALIFLALCLYIITLRRKDAIWYPF
Sequences:
>Translated_120_residues MPALPSFVRLLPILLLALPMAGFGIAKLLGVAELHRAFQAMALPAWFGYFIGAAELAAGIGLLLPRWSALAATGLIPIML GAAGFHLVFDVPSPIPALIFLALCLYIITLRRKDAIWYPF >Mature_119_residues PALPSFVRLLPILLLALPMAGFGIAKLLGVAELHRAFQAMALPAWFGYFIGAAELAAGIGLLLPRWSALAATGLIPIMLG AAGFHLVFDVPSPIPALIFLALCLYIITLRRKDAIWYPF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 12899; Mature: 12768
Theoretical pI: Translated: 9.76; Mature: 9.76
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPALPSFVRLLPILLLALPMAGFGIAKLLGVAELHRAFQAMALPAWFGYFIGAAELAAGI CCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GLLLPRWSALAATGLIPIMLGAAGFHLVFDVPSPIPALIFLALCLYIITLRRKDAIWYPF HHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCC >Mature Secondary Structure PALPSFVRLLPILLLALPMAGFGIAKLLGVAELHRAFQAMALPAWFGYFIGAAELAAGI CCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GLLLPRWSALAATGLIPIMLGAAGFHLVFDVPSPIPALIFLALCLYIITLRRKDAIWYPF HHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA