| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119775978
Identifier: 119775978
GI number: 119775978
Start: 3385074
End: 3386021
Strand: Direct
Name: 119775978
Synonym: Sama_2846
Alternate gene names: NA
Gene position: 3385074-3386021 (Clockwise)
Preceding gene: 119775977
Following gene: 119775982
Centisome position: 78.61
GC content: 35.34
Gene sequence:
>948_bases GTGGAAGACTTAAAGCATCAAATAAGAATGCAAGCTACTGCCAATGTGTTTCAAACTATGGGCACGGAAGGTTCTGGGGT CAAAGTTATCGAACAATTTAAAAGCATGCCTGATGAACTACTAGATATTCTGGGAACAAATGCAGGTATCAAAAAAGAGC ACTTACCAATATATCGCAAGTTAACTCGAGGCGAAGAAAATGATTTTACTGAAAAGCTTCAGAATTTTAAAGATGAACTG AAAACAGGAGATATTATCCTTGTAACTGGTACTTCAAACTCCTCAAAGGTATTGGCGAAATTACAAAAAACGGTTTACTC AAAAGCTCGATCTAGTCATGTTGTAATCGTTCTAGCCGACTTTATATGTATAGATGCAATGCCCAATATCGGTGTTTCTC TTAAATTAATACCTGAAGTTTTGAATGATGTTCAAGAAGGTTGGCGGATTATTCGATTTAAAGGACTACAAGAGAAAGAC AGTGAGGTGCTCAGCAAGACATGCGCTTATTATATTGAGCAACCATATATAATTTTGCCAAAAAAGAAACCGGCAAAGAA ATTCTCATACTGTTCCGAATTAGCACGTAAAGTTTATCTTGATAGCAAAATTAAAAATACTGGGATCCCAAATAATACCA TTATAAAGCCATGTGATTTCGATAAAATCGCCGATCAAAATAGTCAGTGGCTAGACGTAACAGATTCCGTTAAGCCTTAC GTAGAGTTCTGTATAGAATATGAAGGGGTCTTAAAGTTCATAGCTAAGAGCTTTACACAAGGCATAGAGCTAAACCGGCA ACGATTTAGCGAACGAAGAAAAGTTAAAGAAAATGTATCTAAAATGCATAAAGAAGGTGTGATTACCGACTCTGGTGCAG CTCAGATAAAAAATAAAATAGAGTTACTTGAAAAATCATTAAACTATAAGTTTTGGGATTATCAATAA
Upstream 100 bases:
>100_bases GTTGCTCAAATTTACTCCGTGGGACTGGCGCGTGGCGCCAGCCCCTTAGCAAAGCGTTAGGCCTCGTTTACTCTAGCATA GGCGGACAAGGAAAATTTAA
Downstream 100 bases:
>100_bases GGCCTAACAAGCGCCTCAACAAAGGACGTAAAAAGCTTGGCTTACGCTCCTTCGTCGCGCTAATTATAGCCAAGCATTTT ACGCCTTTTAGGCGGGCGTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 315; Mature: 315
Protein sequence:
>315_residues MEDLKHQIRMQATANVFQTMGTEGSGVKVIEQFKSMPDELLDILGTNAGIKKEHLPIYRKLTRGEENDFTEKLQNFKDEL KTGDIILVTGTSNSSKVLAKLQKTVYSKARSSHVVIVLADFICIDAMPNIGVSLKLIPEVLNDVQEGWRIIRFKGLQEKD SEVLSKTCAYYIEQPYIILPKKKPAKKFSYCSELARKVYLDSKIKNTGIPNNTIIKPCDFDKIADQNSQWLDVTDSVKPY VEFCIEYEGVLKFIAKSFTQGIELNRQRFSERRKVKENVSKMHKEGVITDSGAAQIKNKIELLEKSLNYKFWDYQ
Sequences:
>Translated_315_residues MEDLKHQIRMQATANVFQTMGTEGSGVKVIEQFKSMPDELLDILGTNAGIKKEHLPIYRKLTRGEENDFTEKLQNFKDEL KTGDIILVTGTSNSSKVLAKLQKTVYSKARSSHVVIVLADFICIDAMPNIGVSLKLIPEVLNDVQEGWRIIRFKGLQEKD SEVLSKTCAYYIEQPYIILPKKKPAKKFSYCSELARKVYLDSKIKNTGIPNNTIIKPCDFDKIADQNSQWLDVTDSVKPY VEFCIEYEGVLKFIAKSFTQGIELNRQRFSERRKVKENVSKMHKEGVITDSGAAQIKNKIELLEKSLNYKFWDYQ >Mature_315_residues MEDLKHQIRMQATANVFQTMGTEGSGVKVIEQFKSMPDELLDILGTNAGIKKEHLPIYRKLTRGEENDFTEKLQNFKDEL KTGDIILVTGTSNSSKVLAKLQKTVYSKARSSHVVIVLADFICIDAMPNIGVSLKLIPEVLNDVQEGWRIIRFKGLQEKD SEVLSKTCAYYIEQPYIILPKKKPAKKFSYCSELARKVYLDSKIKNTGIPNNTIIKPCDFDKIADQNSQWLDVTDSVKPY VEFCIEYEGVLKFIAKSFTQGIELNRQRFSERRKVKENVSKMHKEGVITDSGAAQIKNKIELLEKSLNYKFWDYQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 36047; Mature: 36047
Theoretical pI: Translated: 9.18; Mature: 9.18
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEDLKHQIRMQATANVFQTMGTEGSGVKVIEQFKSMPDELLDILGTNAGIKKEHLPIYRK CCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCHHHHHHHHCCCCCCCCCCCHHHHH LTRGEENDFTEKLQNFKDELKTGDIILVTGTSNSSKVLAKLQKTVYSKARSSHVVIVLAD HHCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEEHH FICIDAMPNIGVSLKLIPEVLNDVQEGWRIIRFKGLQEKDSEVLSKTCAYYIEQPYIILP HHHHHCCCCCCCHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEC KKKPAKKFSYCSELARKVYLDSKIKNTGIPNNTIIKPCDFDKIADQNSQWLDVTDSVKPY CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHHHCCCCCEECCCHHHHHH VEFCIEYEGVLKFIAKSFTQGIELNRQRFSERRKVKENVSKMHKEGVITDSGAAQIKNKI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH ELLEKSLNYKFWDYQ HHHHHHCCCCCCCCC >Mature Secondary Structure MEDLKHQIRMQATANVFQTMGTEGSGVKVIEQFKSMPDELLDILGTNAGIKKEHLPIYRK CCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCHHHHHHHHCCCCCCCCCCCHHHHH LTRGEENDFTEKLQNFKDELKTGDIILVTGTSNSSKVLAKLQKTVYSKARSSHVVIVLAD HHCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEEHH FICIDAMPNIGVSLKLIPEVLNDVQEGWRIIRFKGLQEKDSEVLSKTCAYYIEQPYIILP HHHHHCCCCCCCHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEC KKKPAKKFSYCSELARKVYLDSKIKNTGIPNNTIIKPCDFDKIADQNSQWLDVTDSVKPY CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHHHCCCCCEECCCHHHHHH VEFCIEYEGVLKFIAKSFTQGIELNRQRFSERRKVKENVSKMHKEGVITDSGAAQIKNKI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH ELLEKSLNYKFWDYQ HHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA