| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119775911
Identifier: 119775911
GI number: 119775911
Start: 3321415
End: 3322554
Strand: Direct
Name: 119775911
Synonym: Sama_2779
Alternate gene names: NA
Gene position: 3321415-3322554 (Clockwise)
Preceding gene: 119775910
Following gene: 119775916
Centisome position: 77.13
GC content: 59.04
Gene sequence:
>1140_bases ATGACCAATCTTCACCGGCGCAGCCTGATAAAAGCCCTCGGCGCCAGCGCCCTCTTATCTGCCCTGCCCACCGGCGTGCT TGCCGCCAAGTCACTGCGACCACTCTACATAGATGGCCTGTCGTTTTTACCGGACTCTCTGGACGATCTCGCCGCCTCCG GTCTTTCGGCCTACCTGTGCGATATCTCCGCCATCGAAGAAGTAAAACAGGAAGATGGCACCCTCAACTACAAGCGCACC TACAACGCCTGCATCAAGTCGATTGCCGACGCCGGAAAACGCGTCAGCGATAACCCGGGGCAGCTGCTGCAGGGGCTTTC AGCCAAAGACATCAAAAACGCCCGTGAGTCGGGCCGCACCGCGGTCTTTTTTCAAATTCAGGGGGCAGACTGCGTAGAAG AACGCCTGTCACAGGTGGATGAGTTCTACCAAAAGGGCCTCAGGGTAATGCAGCTCACCCATCACTATGGCAACAGCTTT GCCGGTGGCGCACTGGACAGCGATGAGCACGGCGGCCTCAATCTCCCCCTGAGCCCCAAGGGCTATGCCCTGGTGGATAA GCTCAACGACAGCGGCATTCTCATCGACCTGAGTCACTCCAGCCCTCAAACCGCGCTGGACACCATAGCTGCCTCCCGCA TGCCGGTGGTGCAAAGCCACGGTGCGGCCCGTGCCATCGTCAACCATGCCCGCTGTTCACCGGATCAGGTGATCCGCGCC ATCGCAGACAGTGGCGGTGTATTCGGGACCTTTATGATGAGCTTTTGGCTGACCACCAGCAGCACTCCCACGGTTGAGCA CTATCTGGCACAGCTGAAGCACGTGGCCAGGGTGGGAGGTATCGACGCGGTCGCCATTGCCAACGACTATCCCCTGCGCG GCCAGGAAAACCTGCTCAAACTCAACAATGACAACGCCGAAGGGGTGAAGGAGTATCTGGACTGGTGGCACAGCCTGCGG GCCAAAAAGGTACTCGGCTTCGACCATGAGCCGGTGCACGTGGTTATCCCCGAACTCAATCACATTGAGCGCATGAGCCG CATCCACGATGCCCTCAAGGATGCAGGCTTCAGCGCCGCTGACGCCGATAAAATCATGGGCGGCAACTGGCAGCGGGTAT TGCAGCAGGTACTGGTGTAA
Upstream 100 bases:
>100_bases TCAGCGCCCTCGGGCTGGAGGGGCAGCTCAGCCCATCACGCACCAATGGCGTGTATGCCCTGGCAAACCGCATCAAAGAA TTAAGCCGCGAGGATACCCC
Downstream 100 bases:
>100_bases AGCGCCATGGCGAGGTGGTTGGCGCTACTGAGCAGAGGCGTGCGGTTCTGGGAGATTAACGCCTAAATCAGTTGCGCCGT AGGCTTCACCTGAATTTTCT
Product: renal dipeptidase family protein
Products: NA
Alternate protein names: ORF X [H]
Number of amino acids: Translated: 379; Mature: 378
Protein sequence:
>379_residues MTNLHRRSLIKALGASALLSALPTGVLAAKSLRPLYIDGLSFLPDSLDDLAASGLSAYLCDISAIEEVKQEDGTLNYKRT YNACIKSIADAGKRVSDNPGQLLQGLSAKDIKNARESGRTAVFFQIQGADCVEERLSQVDEFYQKGLRVMQLTHHYGNSF AGGALDSDEHGGLNLPLSPKGYALVDKLNDSGILIDLSHSSPQTALDTIAASRMPVVQSHGAARAIVNHARCSPDQVIRA IADSGGVFGTFMMSFWLTTSSTPTVEHYLAQLKHVARVGGIDAVAIANDYPLRGQENLLKLNNDNAEGVKEYLDWWHSLR AKKVLGFDHEPVHVVIPELNHIERMSRIHDALKDAGFSAADADKIMGGNWQRVLQQVLV
Sequences:
>Translated_379_residues MTNLHRRSLIKALGASALLSALPTGVLAAKSLRPLYIDGLSFLPDSLDDLAASGLSAYLCDISAIEEVKQEDGTLNYKRT YNACIKSIADAGKRVSDNPGQLLQGLSAKDIKNARESGRTAVFFQIQGADCVEERLSQVDEFYQKGLRVMQLTHHYGNSF AGGALDSDEHGGLNLPLSPKGYALVDKLNDSGILIDLSHSSPQTALDTIAASRMPVVQSHGAARAIVNHARCSPDQVIRA IADSGGVFGTFMMSFWLTTSSTPTVEHYLAQLKHVARVGGIDAVAIANDYPLRGQENLLKLNNDNAEGVKEYLDWWHSLR AKKVLGFDHEPVHVVIPELNHIERMSRIHDALKDAGFSAADADKIMGGNWQRVLQQVLV >Mature_378_residues TNLHRRSLIKALGASALLSALPTGVLAAKSLRPLYIDGLSFLPDSLDDLAASGLSAYLCDISAIEEVKQEDGTLNYKRTY NACIKSIADAGKRVSDNPGQLLQGLSAKDIKNARESGRTAVFFQIQGADCVEERLSQVDEFYQKGLRVMQLTHHYGNSFA GGALDSDEHGGLNLPLSPKGYALVDKLNDSGILIDLSHSSPQTALDTIAASRMPVVQSHGAARAIVNHARCSPDQVIRAI ADSGGVFGTFMMSFWLTTSSTPTVEHYLAQLKHVARVGGIDAVAIANDYPLRGQENLLKLNNDNAEGVKEYLDWWHSLRA KKVLGFDHEPVHVVIPELNHIERMSRIHDALKDAGFSAADADKIMGGNWQRVLQQVLV
Specific function: Unknown
COG id: COG2355
COG function: function code E; Zn-dependent dipeptidase, microsomal dipeptidase homolog
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase M19 family [H]
Homologues:
Organism=Homo sapiens, GI189458885, Length=226, Percent_Identity=26.1061946902655, Blast_Score=89, Evalue=8e-18, Organism=Homo sapiens, GI4758190, Length=226, Percent_Identity=26.1061946902655, Blast_Score=89, Evalue=8e-18, Organism=Homo sapiens, GI11641269, Length=180, Percent_Identity=26.6666666666667, Blast_Score=74, Evalue=3e-13, Organism=Homo sapiens, GI193211608, Length=175, Percent_Identity=25.7142857142857, Blast_Score=67, Evalue=4e-11, Organism=Homo sapiens, GI193211610, Length=175, Percent_Identity=26.8571428571429, Blast_Score=66, Evalue=5e-11, Organism=Drosophila melanogaster, GI281362638, Length=188, Percent_Identity=34.0425531914894, Blast_Score=102, Evalue=4e-22, Organism=Drosophila melanogaster, GI281362636, Length=188, Percent_Identity=34.0425531914894, Blast_Score=102, Evalue=4e-22, Organism=Drosophila melanogaster, GI161083233, Length=187, Percent_Identity=32.620320855615, Blast_Score=101, Evalue=9e-22, Organism=Drosophila melanogaster, GI221475880, Length=294, Percent_Identity=25.8503401360544, Blast_Score=92, Evalue=6e-19,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008257 [H]
Pfam domain/function: PF01244 Peptidase_M19 [H]
EC number: NA
Molecular weight: Translated: 41163; Mature: 41032
Theoretical pI: Translated: 6.63; Mature: 6.63
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTNLHRRSLIKALGASALLSALPTGVLAAKSLRPLYIDGLSFLPDSLDDLAASGLSAYLC CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCCEECCHHHCCCCHHHHHHHCHHHHHH DISAIEEVKQEDGTLNYKRTYNACIKSIADAGKRVSDNPGQLLQGLSAKDIKNARESGRT HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCHHHHHHHHHCCCE AVFFQIQGADCVEERLSQVDEFYQKGLRVMQLTHHYGNSFAGGALDSDEHGGLNLPLSPK EEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC GYALVDKLNDSGILIDLSHSSPQTALDTIAASRMPVVQSHGAARAIVNHARCSPDQVIRA CCEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCHHHHCCHHHHHHHHHCCCHHHHHHH IADSGGVFGTFMMSFWLTTSSTPTVEHYLAQLKHVARVGGIDAVAIANDYPLRGQENLLK HHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEE LNNDNAEGVKEYLDWWHSLRAKKVLGFDHEPVHVVIPELNHIERMSRIHDALKDAGFSAA ECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCHHHHHHHHHHHHHHHHCCCCCC DADKIMGGNWQRVLQQVLV CHHHHCCCCHHHHHHHHCC >Mature Secondary Structure TNLHRRSLIKALGASALLSALPTGVLAAKSLRPLYIDGLSFLPDSLDDLAASGLSAYLC CCHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCCEECCHHHCCCCHHHHHHHCHHHHHH DISAIEEVKQEDGTLNYKRTYNACIKSIADAGKRVSDNPGQLLQGLSAKDIKNARESGRT HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCHHHHHHHHHCCCE AVFFQIQGADCVEERLSQVDEFYQKGLRVMQLTHHYGNSFAGGALDSDEHGGLNLPLSPK EEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC GYALVDKLNDSGILIDLSHSSPQTALDTIAASRMPVVQSHGAARAIVNHARCSPDQVIRA CCEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCHHHHCCHHHHHHHHHCCCHHHHHHH IADSGGVFGTFMMSFWLTTSSTPTVEHYLAQLKHVARVGGIDAVAIANDYPLRGQENLLK HHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEE LNNDNAEGVKEYLDWWHSLRAKKVLGFDHEPVHVVIPELNHIERMSRIHDALKDAGFSAA ECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCHHHHHHHHHHHHHHHHCCCCCC DADKIMGGNWQRVLQQVLV CHHHHCCCCHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 1313537 [H]