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The map label for this gene is ygdK [H]

Identifier: 119775910

GI number: 119775910

Start: 3320960

End: 3321418

Strand: Direct

Name: ygdK [H]

Synonym: Sama_2778

Alternate gene names: 119775910

Gene position: 3320960-3321418 (Clockwise)

Preceding gene: 119775909

Following gene: 119775911

Centisome position: 77.12

GC content: 61.22

Gene sequence:

>459_bases
ATGGAACTACGTCCCACCCCCACCGACTTTTTAAGCCGCCATCACAGCAGCAGTGCCCCGCTCGCGCAGCTGGTTAATCA
GGTGCAGCAAGCCCCCAACTGGCAGGAAAAGTACCGTGCCCTGATGTTGGGTGGCAAAGCCCTGGCGCCCCTTTCGCCCG
AGTGGCAAACCGAGGATGCCAGAGTGCGCGGCTGTGAGAGCGCCGCCTGGCTGTATCATCATGGCGAGCAGGGAAAACAC
TATTTTATTGCCGGCTCTGAGGCGCGCATTGTCACCGGCCTGATAGCCCTGCTGCTGGGCGCCTGCTCGGGCAAAACCAG
CGACGAGCTTGCCGCATTCGATGCAGCGGCCTATTTCAGCGCCCTCGGGCTGGAGGGGCAGCTCAGCCCATCACGCACCA
ATGGCGTGTATGCCCTGGCAAACCGCATCAAAGAATTAAGCCGCGAGGATACCCCATGA

Upstream 100 bases:

>100_bases
CCATCGGCCTTTACACCAGCCCGGATGATATCGACCGTTTTCTCGCCGCCGTCAAAGAAGCGGCCGAACTCTTATGCCCA
TGATCTGCTGCGAGGAAACC

Downstream 100 bases:

>100_bases
CCAATCTTCACCGGCGCAGCCTGATAAAAGCCCTCGGCGCCAGCGCCCTCTTATCTGCCCTGCCCACCGGCGTGCTTGCC
GCCAAGTCACTGCGACCACT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 152; Mature: 152

Protein sequence:

>152_residues
MELRPTPTDFLSRHHSSSAPLAQLVNQVQQAPNWQEKYRALMLGGKALAPLSPEWQTEDARVRGCESAAWLYHHGEQGKH
YFIAGSEARIVTGLIALLLGACSGKTSDELAAFDAAAYFSALGLEGQLSPSRTNGVYALANRIKELSREDTP

Sequences:

>Translated_152_residues
MELRPTPTDFLSRHHSSSAPLAQLVNQVQQAPNWQEKYRALMLGGKALAPLSPEWQTEDARVRGCESAAWLYHHGEQGKH
YFIAGSEARIVTGLIALLLGACSGKTSDELAAFDAAAYFSALGLEGQLSPSRTNGVYALANRIKELSREDTP
>Mature_152_residues
MELRPTPTDFLSRHHSSSAPLAQLVNQVQQAPNWQEKYRALMLGGKALAPLSPEWQTEDARVRGCESAAWLYHHGEQGKH
YFIAGSEARIVTGLIALLLGACSGKTSDELAAFDAAAYFSALGLEGQLSPSRTNGVYALANRIKELSREDTP

Specific function: Unknown

COG id: COG2166

COG function: function code R; SufE protein probably involved in Fe-S center assembly

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sufE family [H]

Homologues:

Organism=Escherichia coli, GI1789176, Length=111, Percent_Identity=45.945945945946, Blast_Score=93, Evalue=6e-21,
Organism=Escherichia coli, GI1787969, Length=118, Percent_Identity=29.6610169491525, Blast_Score=65, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017763
- InterPro:   IPR003808 [H]

Pfam domain/function: PF02657 SufE [H]

EC number: NA

Molecular weight: Translated: 16552; Mature: 16552

Theoretical pI: Translated: 6.67; Mature: 6.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELRPTPTDFLSRHHSSSAPLAQLVNQVQQAPNWQEKYRALMLGGKALAPLSPEWQTEDA
CCCCCCCHHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCH
RVRGCESAAWLYHHGEQGKHYFIAGSEARIVTGLIALLLGACSGKTSDELAAFDAAAYFS
HHHCCCHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
ALGLEGQLSPSRTNGVYALANRIKELSREDTP
HHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MELRPTPTDFLSRHHSSSAPLAQLVNQVQQAPNWQEKYRALMLGGKALAPLSPEWQTEDA
CCCCCCCHHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCH
RVRGCESAAWLYHHGEQGKHYFIAGSEARIVTGLIALLLGACSGKTSDELAAFDAAAYFS
HHHCCCHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
ALGLEGQLSPSRTNGVYALANRIKELSREDTP
HHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]