| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is tas [H]
Identifier: 119775908
GI number: 119775908
Start: 3318543
End: 3319580
Strand: Direct
Name: tas [H]
Synonym: Sama_2776
Alternate gene names: 119775908
Gene position: 3318543-3319580 (Clockwise)
Preceding gene: 119775907
Following gene: 119775909
Centisome position: 77.07
GC content: 57.03
Gene sequence:
>1038_bases ATGGAATACCGCCGCCTGCCCCACTCCAATCTGGAGGTCAGTTCCCTGTGCCTTGGCACCATGACCTGGGGCGAACAAAA TACCCAGGCCGACGCCTTTGCACAGCTGGACTACGCCATTGGCCGGGGTATCAACTTTATCGACGCCGCCGAAATGTATC CTGTGCCGCCCCGCCCCGAGACCCAGGGGGCGACAGAAGAGATCCTCGGCAACTACCTTAAGGCCCGTGGCAATCGCGAT GAACTGGTGATCGCCACCAAGATTTGTGCCCACGGAGGCAAGGGCGACTATATCCGCCCCAAGATGGCACTGGACTGGAA CAACATCCACGAAGCCGTGGATCAATCTCTAACCCGTCTGGGCATAGACACCATCGACCTGTATCAGCTGCACTGGCCCG ACAGAAACACCAATTTCTTCGGCGAGCTGATGTACAAGCGTGACGATGCCGAGCACCAAACCCCCATTATCGAAACCCTC GAGGCCCTGGCCGAGCTCATTCGGGTGGGGAAAATCCGTTATATCGGTGTCTCCAACGAAACCCCCTGGGGCATCATGAA GTACCTGCATCTGGCCGAAAAACATGGTCTGCCCCGCATCGTTTCGATTCAAAACCCCTACAACCTGCTTAACCGCAGTT TTGAAGTGGGCATGAGCGAAATCAGTCACAGGGAAGAGTTGCCGCTGCTGGCCTACTCGCCACTGGCCTTTGGCACCTTA AGCGGAAAATACCTCAACGGCGAATGGCCGGAGCAGGCACGCCTGACCCTGTTCAAGCGTTTTGCCCGCTACAGCAGCGA CCATGCCAAAGCAGCCACCGAGGCCTATGTGAATCTGGCGCGGGAGTTCAATTTAAGTCCGGCGCAAATGGCGCTGGCCT TTGTAAACAGCCGCAGCTTTGTGGGCAGCAATATCATAGGCGCCACCTCGGTGGAGCAGCTGAAAGAGAACATCGACAGC CTCGATGTCAGCCTGCCCGAGGCGCTTTTTGAGCGCATCAATGCCCTCGGGGAAATCTACCGTTTACCCTGCCCTTAA
Upstream 100 bases:
>100_bases TTTTGTGCAAGCGATAAGGCAAGGCCCTGTGCTGCCTTGCTTTATCAGCCAGACTTGATAGCTTCAAACTCATAACGCCT ATTATGCTGAGGATGTTTTG
Downstream 100 bases:
>100_bases GTTACGGGCTGCCAATACTCATCAAATATTGCGTCAATTCCTGTTTCAATCCCGGCGCGGCCTTGCAATGGCCGCGCAAA TCCTTAAAGATCGACTCAAT
Product: aldo/keto reductase family oxidoreductase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 345; Mature: 345
Protein sequence:
>345_residues MEYRRLPHSNLEVSSLCLGTMTWGEQNTQADAFAQLDYAIGRGINFIDAAEMYPVPPRPETQGATEEILGNYLKARGNRD ELVIATKICAHGGKGDYIRPKMALDWNNIHEAVDQSLTRLGIDTIDLYQLHWPDRNTNFFGELMYKRDDAEHQTPIIETL EALAELIRVGKIRYIGVSNETPWGIMKYLHLAEKHGLPRIVSIQNPYNLLNRSFEVGMSEISHREELPLLAYSPLAFGTL SGKYLNGEWPEQARLTLFKRFARYSSDHAKAATEAYVNLAREFNLSPAQMALAFVNSRSFVGSNIIGATSVEQLKENIDS LDVSLPEALFERINALGEIYRLPCP
Sequences:
>Translated_345_residues MEYRRLPHSNLEVSSLCLGTMTWGEQNTQADAFAQLDYAIGRGINFIDAAEMYPVPPRPETQGATEEILGNYLKARGNRD ELVIATKICAHGGKGDYIRPKMALDWNNIHEAVDQSLTRLGIDTIDLYQLHWPDRNTNFFGELMYKRDDAEHQTPIIETL EALAELIRVGKIRYIGVSNETPWGIMKYLHLAEKHGLPRIVSIQNPYNLLNRSFEVGMSEISHREELPLLAYSPLAFGTL SGKYLNGEWPEQARLTLFKRFARYSSDHAKAATEAYVNLAREFNLSPAQMALAFVNSRSFVGSNIIGATSVEQLKENIDS LDVSLPEALFERINALGEIYRLPCP >Mature_345_residues MEYRRLPHSNLEVSSLCLGTMTWGEQNTQADAFAQLDYAIGRGINFIDAAEMYPVPPRPETQGATEEILGNYLKARGNRD ELVIATKICAHGGKGDYIRPKMALDWNNIHEAVDQSLTRLGIDTIDLYQLHWPDRNTNFFGELMYKRDDAEHQTPIIETL EALAELIRVGKIRYIGVSNETPWGIMKYLHLAEKHGLPRIVSIQNPYNLLNRSFEVGMSEISHREELPLLAYSPLAFGTL SGKYLNGEWPEQARLTLFKRFARYSSDHAKAATEAYVNLAREFNLSPAQMALAFVNSRSFVGSNIIGATSVEQLKENIDS LDVSLPEALFERINALGEIYRLPCP
Specific function: Unknown
COG id: COG0667
COG function: function code C; Predicted oxidoreductases (related to aryl-alcohol dehydrogenases)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the aldo/keto reductase 2 family [H]
Homologues:
Organism=Homo sapiens, GI27436962, Length=350, Percent_Identity=30.2857142857143, Blast_Score=117, Evalue=1e-26, Organism=Homo sapiens, GI27436964, Length=351, Percent_Identity=31.0541310541311, Blast_Score=117, Evalue=1e-26, Organism=Homo sapiens, GI27436969, Length=346, Percent_Identity=30.3468208092486, Blast_Score=117, Evalue=2e-26, Organism=Homo sapiens, GI4504825, Length=344, Percent_Identity=30.2325581395349, Blast_Score=115, Evalue=4e-26, Organism=Homo sapiens, GI27436966, Length=351, Percent_Identity=30.7692307692308, Blast_Score=114, Evalue=9e-26, Organism=Homo sapiens, GI27436971, Length=352, Percent_Identity=28.9772727272727, Blast_Score=100, Evalue=3e-21, Organism=Homo sapiens, GI223718702, Length=347, Percent_Identity=25.0720461095101, Blast_Score=76, Evalue=5e-14, Organism=Homo sapiens, GI41327764, Length=347, Percent_Identity=25.9365994236311, Blast_Score=73, Evalue=3e-13, Organism=Homo sapiens, GI41152114, Length=355, Percent_Identity=26.1971830985915, Blast_Score=67, Evalue=3e-11, Organism=Escherichia coli, GI1789199, Length=346, Percent_Identity=58.6705202312139, Blast_Score=417, Evalue=1e-118, Organism=Escherichia coli, GI87081735, Length=343, Percent_Identity=32.9446064139942, Blast_Score=153, Evalue=2e-38, Organism=Escherichia coli, GI1789375, Length=341, Percent_Identity=31.0850439882698, Blast_Score=120, Evalue=1e-28, Organism=Escherichia coli, GI1788070, Length=293, Percent_Identity=30.3754266211604, Blast_Score=95, Evalue=5e-21, Organism=Escherichia coli, GI1788081, Length=324, Percent_Identity=29.0123456790123, Blast_Score=80, Evalue=3e-16, Organism=Escherichia coli, GI1787674, Length=323, Percent_Identity=24.7678018575851, Blast_Score=69, Evalue=4e-13, Organism=Saccharomyces cerevisiae, GI6319958, Length=305, Percent_Identity=27.2131147540984, Blast_Score=92, Evalue=2e-19, Organism=Saccharomyces cerevisiae, GI6323998, Length=348, Percent_Identity=27.0114942528736, Blast_Score=91, Evalue=3e-19, Organism=Saccharomyces cerevisiae, GI6325169, Length=363, Percent_Identity=25.068870523416, Blast_Score=84, Evalue=3e-17, Organism=Saccharomyces cerevisiae, GI6319951, Length=327, Percent_Identity=25.6880733944954, Blast_Score=84, Evalue=4e-17, Organism=Saccharomyces cerevisiae, GI6322615, Length=265, Percent_Identity=26.4150943396226, Blast_Score=80, Evalue=4e-16, Organism=Drosophila melanogaster, GI24646159, Length=222, Percent_Identity=29.2792792792793, Blast_Score=66, Evalue=4e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001395 - InterPro: IPR020471 - InterPro: IPR023210 [H]
Pfam domain/function: PF00248 Aldo_ket_red [H]
EC number: NA
Molecular weight: Translated: 38934; Mature: 38934
Theoretical pI: Translated: 5.44; Mature: 5.44
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEYRRLPHSNLEVSSLCLGTMTWGEQNTQADAFAQLDYAIGRGINFIDAAEMYPVPPRPE CCCCCCCCCCCCHHHHHEECCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCC TQGATEEILGNYLKARGNRDELVIATKICAHGGKGDYIRPKMALDWNNIHEAVDQSLTRL CCCCHHHHHHHHHHCCCCCCCEEEEEHHHHCCCCCCCCCCCEECCHHHHHHHHHHHHHHH GIDTIDLYQLHWPDRNTNFFGELMYKRDDAEHQTPIIETLEALAELIRVGKIRYIGVSNE CCCEEEEEEEECCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCEEEEECCCC TPWGIMKYLHLAEKHGLPRIVSIQNPYNLLNRSFEVGMSEISHREELPLLAYSPLAFGTL CCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHCCC SGKYLNGEWPEQARLTLFKRFARYSSDHAKAATEAYVNLAREFNLSPAQMALAFVNSRSF CCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCC VGSNIIGATSVEQLKENIDSLDVSLPEALFERINALGEIYRLPCP CCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure MEYRRLPHSNLEVSSLCLGTMTWGEQNTQADAFAQLDYAIGRGINFIDAAEMYPVPPRPE CCCCCCCCCCCCHHHHHEECCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCC TQGATEEILGNYLKARGNRDELVIATKICAHGGKGDYIRPKMALDWNNIHEAVDQSLTRL CCCCHHHHHHHHHHCCCCCCCEEEEEHHHHCCCCCCCCCCCEECCHHHHHHHHHHHHHHH GIDTIDLYQLHWPDRNTNFFGELMYKRDDAEHQTPIIETLEALAELIRVGKIRYIGVSNE CCCEEEEEEEECCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCEEEEECCCC TPWGIMKYLHLAEKHGLPRIVSIQNPYNLLNRSFEVGMSEISHREELPLLAYSPLAFGTL CCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHCCC SGKYLNGEWPEQARLTLFKRFARYSSDHAKAATEAYVNLAREFNLSPAQMALAFVNSRSF CCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCC VGSNIIGATSVEQLKENIDSLDVSLPEALFERINALGEIYRLPCP CCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9560382; 9278503 [H]