| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
Click here to switch to the map view.
The map label for this gene is yjgM [H]
Identifier: 119775907
GI number: 119775907
Start: 3317499
End: 3318437
Strand: Direct
Name: yjgM [H]
Synonym: Sama_2775
Alternate gene names: 119775907
Gene position: 3317499-3318437 (Clockwise)
Preceding gene: 119775906
Following gene: 119775908
Centisome position: 77.04
GC content: 60.28
Gene sequence:
>939_bases ATGGTCAGAAGCACCCAAGTTCAGGAATCCCAAGCCCGTGAAGTCCGCCAGCTTTCACGGCAATTGATACGTCAGCTCGG CATGTTGGCCGGCGCCGTTGGCAAACTGCCCCTAAGCCCCGTTCAGGCACATGCCCTCATTGAACTGGGGCAGCAGAGTC TGTCCATCAAACAGCTCGCTCAGCTACTGAATATCGACAAATCCAATGCCAGCAGGGCAGTGACCCATCTGGTGGAAAAA AAACTGGTGGAAACCCGGGTGCACCAAAGGGACAGCCGCAGTCTGCAAGCCAGTTTGACCGCCAAAGGCCGCACCATGCT CGAGCGTCTCGACGAGCAGCAGGACAACTACTTCCTGCAGGTATTGGCCCAGCTGACCGACGAAGAAGCGGGGCAAATTG CCCTGGCACTGGGACGTTTTCAGCGGGCCATAGTGCAGGCCAAGGCACAGGACGGCATTGAAATCCGCCCACTTACCCCC GACGACGATGCCGCCATTGCGGCGGTGATCCGCGAAGTGTCAGCGGAATACGGACTGACGCCGGACAAGGGCTACGGCGT CGCCGACAAGACCCTCGACTGCCTGAGCGAGGTGTACAGTGTGCCCGGCGCTGCCTACTGGGTGATTTGTCAGGATGGCC AGGTGCTGGGGGGCGGCGGCATTGCCCCACTCGCCAGTGAACCCGGGGTGTGCGAGCTGCAAAAAATGTACTTTTTGCCG GTGATTCGTGGCAAAGGCCTTGCCAGACGGCTTGCCAACCACAGCCTCGCCTTCGCCCGCCAGGAAGGCTACAGGGAGTG CTACCTGGAGACCACGGCTGTGCTCCACGAAGCCGTAAAGCTCTACGAATCACTGGGCTTTGAACACCTGACCGCCCCCA TGGGCAACACCGGCCACGACGCCTGCGAAATCCCCATGCTTAAGCGCCTCTCCCTCTGA
Upstream 100 bases:
>100_bases CTGCTGCACCCCGAGCTGTATCGATAATGGTACCCGCCCCCTTGCCTAAGGTTAAAAAACTGTTAGATTGGTTGTAATTC GCAACCAACCAAACCGCATC
Downstream 100 bases:
>100_bases TGCAATTTTGTGCAAGCGATAAGGCAAGGCCCTGTGCTGCCTTGCTTTATCAGCCAGACTTGATAGCTTCAAACTCATAA CGCCTATTATGCTGAGGATG
Product: putative acetyltransferase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 312; Mature: 312
Protein sequence:
>312_residues MVRSTQVQESQAREVRQLSRQLIRQLGMLAGAVGKLPLSPVQAHALIELGQQSLSIKQLAQLLNIDKSNASRAVTHLVEK KLVETRVHQRDSRSLQASLTAKGRTMLERLDEQQDNYFLQVLAQLTDEEAGQIALALGRFQRAIVQAKAQDGIEIRPLTP DDDAAIAAVIREVSAEYGLTPDKGYGVADKTLDCLSEVYSVPGAAYWVICQDGQVLGGGGIAPLASEPGVCELQKMYFLP VIRGKGLARRLANHSLAFARQEGYRECYLETTAVLHEAVKLYESLGFEHLTAPMGNTGHDACEIPMLKRLSL
Sequences:
>Translated_312_residues MVRSTQVQESQAREVRQLSRQLIRQLGMLAGAVGKLPLSPVQAHALIELGQQSLSIKQLAQLLNIDKSNASRAVTHLVEK KLVETRVHQRDSRSLQASLTAKGRTMLERLDEQQDNYFLQVLAQLTDEEAGQIALALGRFQRAIVQAKAQDGIEIRPLTP DDDAAIAAVIREVSAEYGLTPDKGYGVADKTLDCLSEVYSVPGAAYWVICQDGQVLGGGGIAPLASEPGVCELQKMYFLP VIRGKGLARRLANHSLAFARQEGYRECYLETTAVLHEAVKLYESLGFEHLTAPMGNTGHDACEIPMLKRLSL >Mature_312_residues MVRSTQVQESQAREVRQLSRQLIRQLGMLAGAVGKLPLSPVQAHALIELGQQSLSIKQLAQLLNIDKSNASRAVTHLVEK KLVETRVHQRDSRSLQASLTAKGRTMLERLDEQQDNYFLQVLAQLTDEEAGQIALALGRFQRAIVQAKAQDGIEIRPLTP DDDAAIAAVIREVSAEYGLTPDKGYGVADKTLDCLSEVYSVPGAAYWVICQDGQVLGGGGIAPLASEPGVCELQKMYFLP VIRGKGLARRLANHSLAFARQEGYRECYLETTAVLHEAVKLYESLGFEHLTAPMGNTGHDACEIPMLKRLSL
Specific function: Unknown
COG id: COG0454
COG function: function code KR; Histone acetyltransferase HPA2 and related acetyltransferases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 N-acetyltransferase domain [H]
Homologues:
Organism=Escherichia coli, GI48995002, Length=157, Percent_Identity=62.4203821656051, Blast_Score=176, Evalue=2e-45,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000182 - InterPro: IPR016181 [H]
Pfam domain/function: PF00583 Acetyltransf_1 [H]
EC number: 2.3.1.-
Molecular weight: Translated: 34169; Mature: 34169
Theoretical pI: Translated: 6.87; Mature: 6.87
Prosite motif: PS50995 HTH_MARR_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVRSTQVQESQAREVRQLSRQLIRQLGMLAGAVGKLPLSPVQAHALIELGQQSLSIKQLA CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHH QLLNIDKSNASRAVTHLVEKKLVETRVHQRDSRSLQASLTAKGRTMLERLDEQQDNYFLQ HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VLAQLTDEEAGQIALALGRFQRAIVQAKAQDGIEIRPLTPDDDAAIAAVIREVSAEYGLT HHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHHHCCCC PDKGYGVADKTLDCLSEVYSVPGAAYWVICQDGQVLGGGGIAPLASEPGVCELQKMYFLP CCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCEEECCCCCCCCCCCCCHHHHHHHHHHH VIRGKGLARRLANHSLAFARQEGYRECYLETTAVLHEAVKLYESLGFEHLTAPMGNTGHD HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCCCCCC ACEIPMLKRLSL CHHCCHHHHCCC >Mature Secondary Structure MVRSTQVQESQAREVRQLSRQLIRQLGMLAGAVGKLPLSPVQAHALIELGQQSLSIKQLA CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHH QLLNIDKSNASRAVTHLVEKKLVETRVHQRDSRSLQASLTAKGRTMLERLDEQQDNYFLQ HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VLAQLTDEEAGQIALALGRFQRAIVQAKAQDGIEIRPLTPDDDAAIAAVIREVSAEYGLT HHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHHHCCCC PDKGYGVADKTLDCLSEVYSVPGAAYWVICQDGQVLGGGGIAPLASEPGVCELQKMYFLP CCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCEEECCCCCCCCCCCCCHHHHHHHHHHH VIRGKGLARRLANHSLAFARQEGYRECYLETTAVLHEAVKLYESLGFEHLTAPMGNTGHD HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCCCCCC ACEIPMLKRLSL CHHCCHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8253666; 11677609 [H]