Click here to switch to the map view.

The map label for this gene is ygfA [C]

Identifier: 119775858

GI number: 119775858

Start: 3260851

End: 3261537

Strand: Direct

Name: ygfA [C]

Synonym: Sama_2726

Alternate gene names: 119775858

Gene position: 3260851-3261537 (Clockwise)

Preceding gene: 119775857

Following gene: 119775859

Centisome position: 75.73

GC content: 59.83

Gene sequence:

>687_bases
ATGACGGTATCCGTCACATCCAACGCGACCAGCGCTGAGGCACCGATTAGCCCAAGTGCTGAGGCACAAGGCAGCATCAG
TGCTGAGGCCCACAGCGGCATAAGTGCAAATTCGTCGCGCAGTGCCATACGCAAACACGTTCGCGCTCTGAGGCGCACCC
TCAGCGGCGATGTGCAGACAGCTGCCGCCATACAGGCAGCGCAGCACCTGTTAACTGAGCTCGCCGATGCCCGTAGGGTC
GCCCTTTACCTTGAAAACGATGGCGAAATCAGCACCCGCCCCCTGATTGAGGCCCTGTGGCAACAAGGGGTTGAGGTGTA
TCTGCCGGTGCTGCATCCCTTCGCCGAAGGCCATTTACTCTTTATCCGTTACGATAAGCACAGCGAGATGCGTGACAACC
TTTATGGCATCCCTGAGCCCGTGATGGCCTGCCACCGCCTGTGCCCAGCCTACCGGCTCGACGCCATTATAACCCCACTG
GTCGCATTTGATGACAGCGGCAATCGTCTTGGCATGGGCGGCGGCTTTTACGACCGCACCCTGGCGCAGCTGCCTGACAG
CACCCGGGTTATTGGCCTCGCCCACGATTGTCAGCGCCTGCCTGCCCTGCCCGTTGAAGCCTGGGATGTGCCTTTGACCA
CCATAGTCACCCCATCGCGAATCCATCGTCTCCCCCCTCGTAATTAA

Upstream 100 bases:

>100_bases
GGCTCGTACCGAGAAGCCTTAGGAAGTAATCGCAGGCCCGCCTTGAACCTACGGTTCAAGGGCTACACCGGCAGCGGCAT
TCCGGGGAGCATCTCAACTT

Downstream 100 bases:

>100_bases
GGCAAGCAAAGCTGCGTGACACGCCACCCATGCAGACATAATAACCTGATTATTATAATTTTTTAAGGTCGAGCCCGTGA
ACCTAGATGATGTAGCACTG

Product: 5-formyltetrahydrofolate cyclo-ligase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 228; Mature: 227

Protein sequence:

>228_residues
MTVSVTSNATSAEAPISPSAEAQGSISAEAHSGISANSSRSAIRKHVRALRRTLSGDVQTAAAIQAAQHLLTELADARRV
ALYLENDGEISTRPLIEALWQQGVEVYLPVLHPFAEGHLLFIRYDKHSEMRDNLYGIPEPVMACHRLCPAYRLDAIITPL
VAFDDSGNRLGMGGGFYDRTLAQLPDSTRVIGLAHDCQRLPALPVEAWDVPLTTIVTPSRIHRLPPRN

Sequences:

>Translated_228_residues
MTVSVTSNATSAEAPISPSAEAQGSISAEAHSGISANSSRSAIRKHVRALRRTLSGDVQTAAAIQAAQHLLTELADARRV
ALYLENDGEISTRPLIEALWQQGVEVYLPVLHPFAEGHLLFIRYDKHSEMRDNLYGIPEPVMACHRLCPAYRLDAIITPL
VAFDDSGNRLGMGGGFYDRTLAQLPDSTRVIGLAHDCQRLPALPVEAWDVPLTTIVTPSRIHRLPPRN
>Mature_227_residues
TVSVTSNATSAEAPISPSAEAQGSISAEAHSGISANSSRSAIRKHVRALRRTLSGDVQTAAAIQAAQHLLTELADARRVA
LYLENDGEISTRPLIEALWQQGVEVYLPVLHPFAEGHLLFIRYDKHSEMRDNLYGIPEPVMACHRLCPAYRLDAIITPLV
AFDDSGNRLGMGGGFYDRTLAQLPDSTRVIGLAHDCQRLPALPVEAWDVPLTTIVTPSRIHRLPPRN

Specific function: Unknown

COG id: COG0212

COG function: function code H; 5-formyltetrahydrofolate cyclo-ligase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 5-formyltetrahydrofolate cyclo-ligase family [H]

Homologues:

Organism=Escherichia coli, GI1789278, Length=178, Percent_Identity=50, Blast_Score=174, Evalue=4e-45,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002698 [H]

Pfam domain/function: PF01812 5-FTHF_cyc-lig [H]

EC number: NA

Molecular weight: Translated: 24860; Mature: 24728

Theoretical pI: Translated: 6.79; Mature: 6.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTVSVTSNATSAEAPISPSAEAQGSISAEAHSGISANSSRSAIRKHVRALRRTLSGDVQT
CEEEECCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCHHH
AAAIQAAQHLLTELADARRVALYLENDGEISTRPLIEALWQQGVEVYLPVLHPFAEGHLL
HHHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHCCCEEEHHHHCCCCCCCEE
FIRYDKHSEMRDNLYGIPEPVMACHRLCPAYRLDAIITPLVAFDDSGNRLGMGGGFYDRT
EEEECCCCHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHHEECCCCCEECCCCCHHHHH
LAQLPDSTRVIGLAHDCQRLPALPVEAWDVPLTTIVTPSRIHRLPPRN
HHHCCCCCEEEEEHHHHHHCCCCCCCCCCCCHHEEECHHHHCCCCCCC
>Mature Secondary Structure 
TVSVTSNATSAEAPISPSAEAQGSISAEAHSGISANSSRSAIRKHVRALRRTLSGDVQT
EEEECCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCHHH
AAAIQAAQHLLTELADARRVALYLENDGEISTRPLIEALWQQGVEVYLPVLHPFAEGHLL
HHHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHCCCEEEHHHHCCCCCCCEE
FIRYDKHSEMRDNLYGIPEPVMACHRLCPAYRLDAIITPLVAFDDSGNRLGMGGGFYDRT
EEEECCCCHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHHEECCCCCEECCCCCHHHHH
LAQLPDSTRVIGLAHDCQRLPALPVEAWDVPLTTIVTPSRIHRLPPRN
HHHCCCCCEEEEEHHHHHHCCCCCCCCCCCCHHEEECHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800; 10675023 [H]