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The map label for this gene is yddE [C]

Identifier: 119775825

GI number: 119775825

Start: 3220543

End: 3221337

Strand: Direct

Name: yddE [C]

Synonym: Sama_2693

Alternate gene names: 119775825

Gene position: 3220543-3221337 (Clockwise)

Preceding gene: 119775824

Following gene: 119775826

Centisome position: 74.79

GC content: 58.11

Gene sequence:

>795_bases
ATGGAAATAACCCTGTATCAGGTCGATGCCTTCGCTCGCCGGGTATTCGAAGGCAATCCGGCCGCAGTGTGTCCGTTGCC
ACACTGGCTGGACGATAAACTGCTCGCCAGTATTGCCAATGAGAACAACCTGTCGGAAACCGCGTTTACAGTGCCGGTGA
ACGGCGGCTACCACCTGCGCTGGTTCACGCCCGCAGAGGAAGTGGAACTGTGCGGTCACGCCACGCTGGCGGCGGCCCAT
GTACTTTTCAACCATCTGGGGCATGAAGGCAATGAGCTTGCCTTCCAGACACTCAGTGGCGTGCTCACAGTGACACGCAG
CAATGACATGTACACCCTGGATTTTCCGGCCACGGTGCCACATCCCACCGAGGTGCCCGCCGCCCTGATTGCAGGTCTGG
GCATGGGCGCTGAAGCGGTACTCACCGGGTTTGATTACATTGTCGTGCTCAAGGATGAAGCGAGCGTAAAAGCCCTAACG
CCGGACTTTACCCCCTGGCACAGCCTGCCCCAGAGAGGCGTGGTTGTCACAGCGCCCGGCGACGAGGTGGACTTTGTCAG
TCGCTGCTTTTTCCCGAGACTCAAAGTGGACGAAGACCCGGTAACAGGGTCGGCTCACTGTGAACTGACACCATACTGGG
CCAAAAGGTTGAACAAAACACGCCTTACGGCCCGGCAATTGTCGTCCCGTCCCGGCAGCCTGTTGTGTGAACTTGTCGGC
GACAGAGTCAGGATCTCCGGTCAGGCAGTGGATTACCTTAAAGGCACTATCCTGCTGCCCGAGGTTAAGGGTTAA

Upstream 100 bases:

>100_bases
CTGAGTGGGATCCCTTGGTTGACTCAAGGCAAACAAGCTGAAATAACAATACCTTGCACAAAATACGAATCTGTTTCCGA
TTTTGCTTCAAGGAAGTCCC

Downstream 100 bases:

>100_bases
GGGTTAAGGGCTAAAGCGTATTCCCATACGCAGGCGAACCGGTGTTAACCCCCGTTTGCTTACTTTTTCCGGGAATTAAC
CTGGATCAAGGCGCCTTGAT

Product: PhzF family phenazine biosynthesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 264; Mature: 264

Protein sequence:

>264_residues
MEITLYQVDAFARRVFEGNPAAVCPLPHWLDDKLLASIANENNLSETAFTVPVNGGYHLRWFTPAEEVELCGHATLAAAH
VLFNHLGHEGNELAFQTLSGVLTVTRSNDMYTLDFPATVPHPTEVPAALIAGLGMGAEAVLTGFDYIVVLKDEASVKALT
PDFTPWHSLPQRGVVVTAPGDEVDFVSRCFFPRLKVDEDPVTGSAHCELTPYWAKRLNKTRLTARQLSSRPGSLLCELVG
DRVRISGQAVDYLKGTILLPEVKG

Sequences:

>Translated_264_residues
MEITLYQVDAFARRVFEGNPAAVCPLPHWLDDKLLASIANENNLSETAFTVPVNGGYHLRWFTPAEEVELCGHATLAAAH
VLFNHLGHEGNELAFQTLSGVLTVTRSNDMYTLDFPATVPHPTEVPAALIAGLGMGAEAVLTGFDYIVVLKDEASVKALT
PDFTPWHSLPQRGVVVTAPGDEVDFVSRCFFPRLKVDEDPVTGSAHCELTPYWAKRLNKTRLTARQLSSRPGSLLCELVG
DRVRISGQAVDYLKGTILLPEVKG
>Mature_264_residues
MEITLYQVDAFARRVFEGNPAAVCPLPHWLDDKLLASIANENNLSETAFTVPVNGGYHLRWFTPAEEVELCGHATLAAAH
VLFNHLGHEGNELAFQTLSGVLTVTRSNDMYTLDFPATVPHPTEVPAALIAGLGMGAEAVLTGFDYIVVLKDEASVKALT
PDFTPWHSLPQRGVVVTAPGDEVDFVSRCFFPRLKVDEDPVTGSAHCELTPYWAKRLNKTRLTARQLSSRPGSLLCELVG
DRVRISGQAVDYLKGTILLPEVKG

Specific function: Unknown

COG id: COG0384

COG function: function code R; Predicted epimerase, PhzC/PhzF homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phzF family [H]

Homologues:

Organism=Homo sapiens, GI62177133, Length=286, Percent_Identity=37.4125874125874, Blast_Score=154, Evalue=8e-38,
Organism=Homo sapiens, GI74316009, Length=253, Percent_Identity=36.3636363636364, Blast_Score=139, Evalue=2e-33,
Organism=Escherichia coli, GI1787737, Length=232, Percent_Identity=31.4655172413793, Blast_Score=83, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI17542160, Length=311, Percent_Identity=33.4405144694534, Blast_Score=149, Evalue=1e-36,
Organism=Caenorhabditis elegans, GI17542154, Length=311, Percent_Identity=33.4405144694534, Blast_Score=149, Evalue=1e-36,
Organism=Caenorhabditis elegans, GI17542158, Length=313, Percent_Identity=34.5047923322684, Blast_Score=147, Evalue=8e-36,
Organism=Caenorhabditis elegans, GI17542152, Length=313, Percent_Identity=34.5047923322684, Blast_Score=147, Evalue=8e-36,
Organism=Saccharomyces cerevisiae, GI6321818, Length=286, Percent_Identity=26.2237762237762, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003719 [H]

Pfam domain/function: PF02567 PhzC-PhzF [H]

EC number: NA

Molecular weight: Translated: 28806; Mature: 28806

Theoretical pI: Translated: 5.31; Mature: 5.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEITLYQVDAFARRVFEGNPAAVCPLPHWLDDKLLASIANENNLSETAFTVPVNGGYHLR
CEEEEEEHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHCCCCCCCEEEEEEECCCEEEE
WFTPAEEVELCGHATLAAAHVLFNHLGHEGNELAFQTLSGVLTVTRSNDMYTLDFPATVP
EECCHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHEECCCEEEEEECCCEEEEECCCCCC
HPTEVPAALIAGLGMGAEAVLTGFDYIVVLKDEASVKALTPDFTPWHSLPQRGVVVTAPG
CCCCHHHHHHHHCCCCHHHHCCCCEEEEEEECCCCEEEECCCCCCCCCCCCCCEEEECCC
DEVDFVSRCFFPRLKVDEDPVTGSAHCELTPYWAKRLNKTRLTARQLSSRPGSLLCELVG
CCHHHHHHHCCCCCCCCCCCCCCCCEEEECHHHHHHCCHHHHHHHHHHCCCHHHHHHHCC
DRVRISGQAVDYLKGTILLPEVKG
CEEEECCCEEHHHCCEEEECCCCC
>Mature Secondary Structure
MEITLYQVDAFARRVFEGNPAAVCPLPHWLDDKLLASIANENNLSETAFTVPVNGGYHLR
CEEEEEEHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHCCCCCCCEEEEEEECCCEEEE
WFTPAEEVELCGHATLAAAHVLFNHLGHEGNELAFQTLSGVLTVTRSNDMYTLDFPATVP
EECCHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHEECCCEEEEEECCCEEEEECCCCCC
HPTEVPAALIAGLGMGAEAVLTGFDYIVVLKDEASVKALTPDFTPWHSLPQRGVVVTAPG
CCCCHHHHHHHHCCCCHHHHCCCCEEEEEEECCCCEEEECCCCCCCCCCCCCCEEEECCC
DEVDFVSRCFFPRLKVDEDPVTGSAHCELTPYWAKRLNKTRLTARQLSSRPGSLLCELVG
CCHHHHHHHCCCCCCCCCCCCCCCCEEEECHHHHHHCCHHHHHHHHHHCCCHHHHHHHCC
DRVRISGQAVDYLKGTILLPEVKG
CEEEECCCEEHHHCCEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]