| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119775826
Identifier: 119775826
GI number: 119775826
Start: 3221488
End: 3221988
Strand: Direct
Name: 119775826
Synonym: Sama_2694
Alternate gene names: NA
Gene position: 3221488-3221988 (Clockwise)
Preceding gene: 119775825
Following gene: 119775827
Centisome position: 74.81
GC content: 54.89
Gene sequence:
>501_bases TTGGGAGCCTTTACCTTGTACGCCACGATTTTACTGCTGCACCTACTGGGGGCAATTCTCTGGACAGGTGGCCATTTGGT TTTAACCTTAAGCATCCTGCCCGCCGCCCTGAAAAACAAAGATCCTCAACCTTTACTGGATTTTGAATCGCGCTTTGAAA AACTGGCCATGACAGCCCTTGCGGTGCAAGTCACCACAGGCATGATGCTGGCGCGCCACTATTTGCCCAACCCTGCACTC TGGTTTGCCGAGGCTCAGCCGTTTTCGGCCATCATCAAGACCAAGTTACTGCTGTTGCTGCTGACACTCCTCACGGCCCT GAGTGCCAGGTTCAGGGTACTGCCCCAGCTGGTCGCCGAGGCTTCATGCCACACCCGCGATAAAACCAACAGTCACCTGC TGTACACCATGGCTGGTCACATCGTTGTTGTGACCCTACTGGCGATGGCCTTTGTTATCACAGGTCTGAGCGTGCGCACC GGCTGGCTGTACCAGCACTAA
Upstream 100 bases:
>100_bases CCCGTTTGCTTACTTTTTCCGGGAATTAACCTGGATCAAGGCGCCTTGATTCACCTCCCTTAAGCTAGCCAAAGCCGCCC TTCACGTCGACAGGGCGCCT
Downstream 100 bases:
>100_bases GCCACCCATTGAATCAATCTTAAAAATTTAAATTAAAACAAGCAGATAAATCAAAACCCCTCTACATCCTCAAGACCACA CTGTTAATCAAACATCCGCT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 166; Mature: 165
Protein sequence:
>166_residues MGAFTLYATILLLHLLGAILWTGGHLVLTLSILPAALKNKDPQPLLDFESRFEKLAMTALAVQVTTGMMLARHYLPNPAL WFAEAQPFSAIIKTKLLLLLLTLLTALSARFRVLPQLVAEASCHTRDKTNSHLLYTMAGHIVVVTLLAMAFVITGLSVRT GWLYQH
Sequences:
>Translated_166_residues MGAFTLYATILLLHLLGAILWTGGHLVLTLSILPAALKNKDPQPLLDFESRFEKLAMTALAVQVTTGMMLARHYLPNPAL WFAEAQPFSAIIKTKLLLLLLTLLTALSARFRVLPQLVAEASCHTRDKTNSHLLYTMAGHIVVVTLLAMAFVITGLSVRT GWLYQH >Mature_165_residues GAFTLYATILLLHLLGAILWTGGHLVLTLSILPAALKNKDPQPLLDFESRFEKLAMTALAVQVTTGMMLARHYLPNPALW FAEAQPFSAIIKTKLLLLLLTLLTALSARFRVLPQLVAEASCHTRDKTNSHLLYTMAGHIVVVTLLAMAFVITGLSVRTG WLYQH
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 18303; Mature: 18172
Theoretical pI: Translated: 10.11; Mature: 10.11
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGAFTLYATILLLHLLGAILWTGGHLVLTLSILPAALKNKDPQPLLDFESRFEKLAMTAL CCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH AVQVTTGMMLARHYLPNPALWFAEAQPFSAIIKTKLLLLLLTLLTALSARFRVLPQLVAE HHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ASCHTRDKTNSHLLYTMAGHIVVVTLLAMAFVITGLSVRTGWLYQH HHHCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCC >Mature Secondary Structure GAFTLYATILLLHLLGAILWTGGHLVLTLSILPAALKNKDPQPLLDFESRFEKLAMTAL CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH AVQVTTGMMLARHYLPNPALWFAEAQPFSAIIKTKLLLLLLTLLTALSARFRVLPQLVAE HHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ASCHTRDKTNSHLLYTMAGHIVVVTLLAMAFVITGLSVRTGWLYQH HHHCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA