| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is crp [C]
Identifier: 119775817
GI number: 119775817
Start: 3214288
End: 3215106
Strand: Direct
Name: crp [C]
Synonym: Sama_2685
Alternate gene names: 119775817
Gene position: 3214288-3215106 (Clockwise)
Preceding gene: 119775816
Following gene: 119775819
Centisome position: 74.64
GC content: 53.6
Gene sequence:
>819_bases ATGATCACCGACATTCAGACCAGTCAGATTATTCATCAGCATCATCTTTTTTCGCCCCTCGAGCCGAGGCAATTGGAACA GTTGCTGGCGGGAGCCGGTCGCATCAGCTTGTCTGCGCAGGAACACCTGTTTCATCGTCAGGACCCCGCCAAACGCTTTT ATCTGGTGCTCAAGGGCAACCTGCAACTCTATATCACCAGCGCCCAGGGGCAGCTTAAGGTGCTGGAGGTCGTGCGGCCA AATCACTCTTTCGCCGAAGCGCTGATTTTCAATCAGGAACCCTTTTACCCTGTGTCTGCCCAGGCGGTACAAGCCTGCGA GCTCATCAGCTTTGATGCCGAGGCCTATCTGGCCATTCTCAAGCAAAGTCCGGATGCCTGCATTGCAGTCATGGCGGCCA TGAGTATGCGCCTGCACAAGGATATTCAGGAGATTGAAAACCTGTCGCTGCAAAATGCCGAGAACCGGCTGCTGATGTTT TTGCTCAGGCACAGCAAACCTTCCGGGGATAACAGCGGCATGCTGACCCTGGATGTGCCCAAACGAACCCTGGCATCGCG GTTGTCAATTCAGCCGGAGACCTTCTCCCGACTGATAAAAAAGATGAACAGTGAAGGTATGATAGAAGAGTCGCGGGGAC TGATTAACATCCCGGATCTCAGCCGTCTTTATGAAAGTATTCAGCAGCTTGAACCAGCGGCATGCGGGCGCTGCCCCATG GCCATGAAAAAGGCAGCACTGAAACAGGCACAAGCAGCAAGCAAAGTCAGTTTGAATACCCGAGCACTGGCGGACAGAAT TCCCGCCAGCGTGAGTTAA
Upstream 100 bases:
>100_bases ATCATTGATCTCAGGCTTATCCATCAAAGGCGATCCAGATCAATGATTTGAATGGAAATGTGACTTAGTCTGCCCTTCAG TAACCGAGCCGGGGGGCAGC
Downstream 100 bases:
>100_bases TCCAAAGCCGTCAGACAGCGTCTTGCAGTCTCCTGCTTGAAGCTGTCAGGTCCCGGCAGTCGTCTCGCAGCTGCCAATCA GGGTCTTGAAGTGTTGCCCC
Product: cAMP-binding protein
Products: NA
Alternate protein names: Crp/FNR Family Transcriptional Regulator; Transcriptional Regulator; CRP/FNR Family Transcriptional Regulator; Crp/Fnr Family Transcriptional Regulator; Crp Family Transcriptional Regulator; Regulator Of Biofilm Formation Fnr Family; Regulatory Protein; CAMP-Dependent Transcriptional Regulator; Transcription Regulator Protein Crp/Fnr Family; Transcription Regulator; Transcriptional Activator FtrB; Transcriptional Regulator Dnr; Cyclic AMP Receptor Protein; Transcriptional Regulator DnrS; Nitrite And Nitric Oxide Reductase Regulator; Transcriptional Regulator Dnr Type; DnrE Protein; Fnr-Like Transcriptional Activator; DNR Protein; Transcription Regulator Protein; Transcriptional Regulator Dnr-Type; Fnr-Like Regulatory Protein; Catabolite Gene Activator; Denitrification Transcriptional Regulator Protein; FNR-Like Transcriptional Regulator; CAMP-Bindin Transcriptional Regulator; Transcriptional Regulator Dnr/Nnr Type
Number of amino acids: Translated: 272; Mature: 272
Protein sequence:
>272_residues MITDIQTSQIIHQHHLFSPLEPRQLEQLLAGAGRISLSAQEHLFHRQDPAKRFYLVLKGNLQLYITSAQGQLKVLEVVRP NHSFAEALIFNQEPFYPVSAQAVQACELISFDAEAYLAILKQSPDACIAVMAAMSMRLHKDIQEIENLSLQNAENRLLMF LLRHSKPSGDNSGMLTLDVPKRTLASRLSIQPETFSRLIKKMNSEGMIEESRGLINIPDLSRLYESIQQLEPAACGRCPM AMKKAALKQAQAASKVSLNTRALADRIPASVS
Sequences:
>Translated_272_residues MITDIQTSQIIHQHHLFSPLEPRQLEQLLAGAGRISLSAQEHLFHRQDPAKRFYLVLKGNLQLYITSAQGQLKVLEVVRP NHSFAEALIFNQEPFYPVSAQAVQACELISFDAEAYLAILKQSPDACIAVMAAMSMRLHKDIQEIENLSLQNAENRLLMF LLRHSKPSGDNSGMLTLDVPKRTLASRLSIQPETFSRLIKKMNSEGMIEESRGLINIPDLSRLYESIQQLEPAACGRCPM AMKKAALKQAQAASKVSLNTRALADRIPASVS >Mature_272_residues MITDIQTSQIIHQHHLFSPLEPRQLEQLLAGAGRISLSAQEHLFHRQDPAKRFYLVLKGNLQLYITSAQGQLKVLEVVRP NHSFAEALIFNQEPFYPVSAQAVQACELISFDAEAYLAILKQSPDACIAVMAAMSMRLHKDIQEIENLSLQNAENRLLMF LLRHSKPSGDNSGMLTLDVPKRTLASRLSIQPETFSRLIKKMNSEGMIEESRGLINIPDLSRLYESIQQLEPAACGRCPM AMKKAALKQAQAASKVSLNTRALADRIPASVS
Specific function: This Protein Complexes With Cyclic AMP And Binds To Specific DNA Sites Near The Promoter To Regulate The Transcription Of Several Catabolite-Sensitive Operons. The Protein Induces A Severe Bend In The DNA. Acts As A Negative Regulator Of Its Own Synthesi
COG id: COG0664
COG function: function code T; cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 30314; Mature: 30314
Theoretical pI: Translated: 8.63; Mature: 8.63
Prosite motif: PS50042 CNMP_BINDING_3 ; PS51063 HTH_CRP_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 5.1 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 5.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MITDIQTSQIIHQHHLFSPLEPRQLEQLLAGAGRISLSAQEHLFHRQDPAKRFYLVLKGN CCCCCHHHHHHHHHHCCCCCCHHHHHHHHHCCCCEEECHHHHHHHCCCCHHEEEEEEECC LQLYITSAQGQLKVLEVVRPNHSFAEALIFNQEPFYPVSAQAVQACELISFDAEAYLAIL EEEEEECCCCCEEEEEEECCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHH KQSPDACIAVMAAMSMRLHKDIQEIENLSLQNAENRLLMFLLRHSKPSGDNSGMLTLDVP HCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEECC KRTLASRLSIQPETFSRLIKKMNSEGMIEESRGLINIPDLSRLYESIQQLEPAACGRCPM HHHHHHHHCCCHHHHHHHHHHHCCCCCCHHCCCEEECCCHHHHHHHHHHHCHHHCCCCHH AMKKAALKQAQAASKVSLNTRALADRIPASVS HHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCC >Mature Secondary Structure MITDIQTSQIIHQHHLFSPLEPRQLEQLLAGAGRISLSAQEHLFHRQDPAKRFYLVLKGN CCCCCHHHHHHHHHHCCCCCCHHHHHHHHHCCCCEEECHHHHHHHCCCCHHEEEEEEECC LQLYITSAQGQLKVLEVVRPNHSFAEALIFNQEPFYPVSAQAVQACELISFDAEAYLAIL EEEEEECCCCCEEEEEEECCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHH KQSPDACIAVMAAMSMRLHKDIQEIENLSLQNAENRLLMFLLRHSKPSGDNSGMLTLDVP HCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEECC KRTLASRLSIQPETFSRLIKKMNSEGMIEESRGLINIPDLSRLYESIQQLEPAACGRCPM HHHHHHHHCCCHHHHHHHHHHHCCCCCCHHCCCEEECCCHHHHHHHHHHHCHHHCCCCHH AMKKAALKQAQAASKVSLNTRALADRIPASVS HHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA