Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

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The map label for this gene is 119775764

Identifier: 119775764

GI number: 119775764

Start: 3152549

End: 3153175

Strand: Reverse

Name: 119775764

Synonym: Sama_2632

Alternate gene names: NA

Gene position: 3153175-3152549 (Counterclockwise)

Preceding gene: 119775765

Following gene: 119775763

Centisome position: 73.23

GC content: 52.15

Gene sequence:

>627_bases
ATGTTACGGTATGACATTTCACGGAAGCTGATTATGAATCGCTATTTACTCCTTCTTCTTGGGCTGCTGCCCGCCACAGG
CGTCCTTGCGCAAACTCAGGAACTGTCGCTCTTTGGTAAGCCTTTTTCGTTTGAATTACCTTCGGGATGGAAATTGGCCG
CCAGTGAAAACAGGGCGGATATGGTGAGTGCCGAATTTGTACCGGCCCAGGAAAATCTCAATCAATGGGGCGGGCTTATT
TGTGTTCAAAGCTTTAAATTGAGTGATGACTCCCCCGCTGCGGAAGTGTTTCTCGATGGCCTCGCCATGCAATATCAGGG
CAGCTGCGAGGGCGAAGTGTCCTACGAAAAGTTGGGTGATGTTGATACCGACGGCCATCCAGGCTTTCACGCCATTCTGG
GGTGCAGCCGTATGCCCAATCAGCACGTATCGATGGAAGAGTCGCGACTGTTTTTTTCCACGCCTGAAGGGGAAGTCGGT
TATTACCGGGTGGTGAGCCGCCCCGGGCAACTGGTGCTGATGCATAAATCCATGCGCGGCGACGTGTTTGCAGGGCAGAA
TATTCCGCTTACACCTGCCAATCACAGCGAATTTATTGCCTCTGTGTTGCCTCTGCGCCTCAATTGA

Upstream 100 bases:

>100_bases
AGGACAGTCAGGACGAAAATGACTACGGTGAAAACCCAAAGGCCTTTGCCTGATAGTCAGTGGGGAGGCTTTCCTCCCCG
TATCTCAAAGCCGTTTCAGG

Downstream 100 bases:

>100_bases
ACTGTCCCCCGCACGAGACAAAGGCATTAGACTTTTATACGTTTAGACGTCTATAATGCGCGGCCGTCCAAGAGTGACGG
CCTCTTTATTGTCAGCCTTT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 208; Mature: 208

Protein sequence:

>208_residues
MLRYDISRKLIMNRYLLLLLGLLPATGVLAQTQELSLFGKPFSFELPSGWKLAASENRADMVSAEFVPAQENLNQWGGLI
CVQSFKLSDDSPAAEVFLDGLAMQYQGSCEGEVSYEKLGDVDTDGHPGFHAILGCSRMPNQHVSMEESRLFFSTPEGEVG
YYRVVSRPGQLVLMHKSMRGDVFAGQNIPLTPANHSEFIASVLPLRLN

Sequences:

>Translated_208_residues
MLRYDISRKLIMNRYLLLLLGLLPATGVLAQTQELSLFGKPFSFELPSGWKLAASENRADMVSAEFVPAQENLNQWGGLI
CVQSFKLSDDSPAAEVFLDGLAMQYQGSCEGEVSYEKLGDVDTDGHPGFHAILGCSRMPNQHVSMEESRLFFSTPEGEVG
YYRVVSRPGQLVLMHKSMRGDVFAGQNIPLTPANHSEFIASVLPLRLN
>Mature_208_residues
MLRYDISRKLIMNRYLLLLLGLLPATGVLAQTQELSLFGKPFSFELPSGWKLAASENRADMVSAEFVPAQENLNQWGGLI
CVQSFKLSDDSPAAEVFLDGLAMQYQGSCEGEVSYEKLGDVDTDGHPGFHAILGCSRMPNQHVSMEESRLFFSTPEGEVG
YYRVVSRPGQLVLMHKSMRGDVFAGQNIPLTPANHSEFIASVLPLRLN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22985; Mature: 22985

Theoretical pI: Translated: 5.02; Mature: 5.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRYDISRKLIMNRYLLLLLGLLPATGVLAQTQELSLFGKPFSFELPSGWKLAASENRAD
CCCCCHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHEECCCEEEECCCCEEEECCCCCCC
MVSAEFVPAQENLNQWGGLICVQSFKLSDDSPAAEVFLDGLAMQYQGSCEGEVSYEKLGD
EEEEECCCCHHHHHHHCCEEEEEEEECCCCCCHHHHHHHHHHEEECCCCCCCCCHHHCCC
VDTDGHPGFHAILGCSRMPNQHVSMEESRLFFSTPEGEVGYYRVVSRPGQLVLMHKSMRG
CCCCCCCCHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCC
DVFAGQNIPLTPANHSEFIASVLPLRLN
CEEECCCCCCCCCCHHHHHHHHCCCCCC
>Mature Secondary Structure
MLRYDISRKLIMNRYLLLLLGLLPATGVLAQTQELSLFGKPFSFELPSGWKLAASENRAD
CCCCCHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHEECCCEEEECCCCEEEECCCCCCC
MVSAEFVPAQENLNQWGGLICVQSFKLSDDSPAAEVFLDGLAMQYQGSCEGEVSYEKLGD
EEEEECCCCHHHHHHHCCEEEEEEEECCCCCCHHHHHHHHHHEEECCCCCCCCCHHHCCC
VDTDGHPGFHAILGCSRMPNQHVSMEESRLFFSTPEGEVGYYRVVSRPGQLVLMHKSMRG
CCCCCCCCHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCC
DVFAGQNIPLTPANHSEFIASVLPLRLN
CEEECCCCCCCCCCHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA