Click here to switch to the map view.

The map label for this gene is yncD [H]

Identifier: 119775763

GI number: 119775763

Start: 3150304

End: 3152244

Strand: Reverse

Name: yncD [H]

Synonym: Sama_2631

Alternate gene names: 119775763

Gene position: 3152244-3150304 (Counterclockwise)

Preceding gene: 119775764

Following gene: 119775762

Centisome position: 73.2

GC content: 55.59

Gene sequence:

>1941_bases
ATGGGTACCAAACCTTCTTTGATTTCATTGGCACTGGCCACAAGCCTGCTGTCATCTTTCGCCTCAGCACAGAGCAGTGT
GGATGAACATCTGGTGGTCATTGGCCGTCAGGCCGATACCCCCCTGAATATTGCCGCGAATGTTGCTGTGATTACCGCAG
AAGACATTGCCTTGAGCGGTGCAACCAGCCTTGCCGGATTGCTGCGTGGTCAGAGTGCCATCCAGATAAGCGACAGCGGC
ACAGGGCCAGTCTTGGCCATGCGCGGCTTTAGTGCTGGCCAGGCAGCCAACAACACCCTGGTGCTGGTGGATGGTCGCCG
TCTCAACAATATTGATATAGCAGCGCCCAGCCTCAATGCCGTGTCCCTGAGTCAGATAGAACGCATTGAAGTGCTCTCCG
GCAGCGCCGGTGTGCTCTATGGCGATCAGGCCGTTGGCGGCGTCATCAATATCATCACCAGGCGCAGTCAGGAAAACACC
GGCGGCGCCTCGCTCACCGGTGGCAGTTTCGGCACCCTTGGCACAGCTATGGATGTTTCGGCGGCGCTGAATGAACGCTG
GAATCTCTTCGTGGGTGGTAACTTCGATAAGAGCGACAACTATCGTGACCATGCCGTCAGTGAGTCTGGCTCAGTGCTGG
GCCGCATCGAATACCGTGGCGATGGGCAGCGCTTCTTTGCTGAAGCTTCCTATTATGATGACGACCGCGAACTTGCAGGT
TCACTCACCGCAGAGGAGCTTGCCGCCAATCCCCGCCAGGCGAATGCTGCCAACAGCAGCGACTATCAGCACAACCTGAC
CAAGGCCGGCCGATTGGGATACGAGCACAGTCTGACCGAACATTGGACCCTGGCTGCCGACTTCGATGCCAGTGATACCC
AAGTGAATTACATCAGTTGGGGCGGCGCGGGCGAAACCGAGCGTCAACTCATCAGCCTGACTCCCAAAGCGATTGGCCGC
TACCAGACAGAGGCGGGCGAACTCAAGTTGGTAACAGGTGTGGACCTGTCTCGTGGCGAGTCAGAATTTACTTCGGCTTA
TATGGAACGCGGCAACACCCAAGAGCATTGGGCTGCTTTTGCTCAGGCATCAGTACCTTTGACCAAGTCGCTGAGTTACG
TGGTGGGTGGGCGTTATGCCGAAGTTCAGGATGAAATTCGCGATCAGAGTACTTTCCCTCTGGGTGGCAAGCTGGATAAC
GACGCCCATGCGCTTGAGCTTGGATTAAATTATCGCCCCGTGCAGGGACACAGATTCTACTTGCGCGCCGAAGATAACTT
CCGTTTTGCCAAGGTAGATGAGCAGGCCTACACCAGTCAGGCCAGTCTGAGACCCCAAACAGGCCGAAGCTATGAAGCCG
GCTGGGATTATCAGGGTGCTCAGCAGGCATTGCGCCTCAGTCTCTACCGTTTAAGCCTGGAAGATGAAATTGTGTTTGAT
CCCAGCGCCGACACTCCGGTGGGGGGCTATTTCCCGGGTGCCAATATCAACGCCGATGAGTCGCGCCGTTATGGTGCCAT
GTTGGACTGGGACTGGCAGCTGAATGACACCATCAGCCTGGGCATAGATTACCAATACACGGATGCTGAATTTACTGCCG
GGCTGAATGATGGCAAGGCGTTGTCCTGGGTCGCCGAACACAGTGGCCGTATGTATGTGTCAGCTCAGTTTGCCGAGTAT
TGGTCGGCCTACGTAGATGCCGCCTACACGGGTGAGCGTTTTGTTGAAGGTGACAACGCCAATATGGGCGAGCAGATGGA
TGCCTTTTGGCTGACCAATGCCGCAGTGAGTTTCCGTAAGGATGCCCTGATTGCGACGCTGAGACTGGATAACCTGTTTG
ATGAAACGTACGCGGCCTCAGGCTTCTACAGTGATTGGGGTAATGGATATTATCCAGGCGAAGGTCGCAAAGTGAGCCTG
ACACTGGGACTGAAATACTGA

Upstream 100 bases:

>100_bases
CAGGTATAGTGGCGGATTTCGGTGGGCAGATCCGCAACAGCGGCAGCTTTTGGCATGTCGATGACTCATGCCCCGTTTCC
CTTGATGGAGTGTAAGGAAA

Downstream 100 bases:

>100_bases
TAAGCCACTGAAATTGAAAAGCCGGACTTGTGTCCGGCTTTTTTTTGGGCGATAACAGACGCATTAGTCCGGGGAGTAAA
AAGTGCGTATTCTGTCAGTG

Product: TonB-dependent receptor domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 646; Mature: 645

Protein sequence:

>646_residues
MGTKPSLISLALATSLLSSFASAQSSVDEHLVVIGRQADTPLNIAANVAVITAEDIALSGATSLAGLLRGQSAIQISDSG
TGPVLAMRGFSAGQAANNTLVLVDGRRLNNIDIAAPSLNAVSLSQIERIEVLSGSAGVLYGDQAVGGVINIITRRSQENT
GGASLTGGSFGTLGTAMDVSAALNERWNLFVGGNFDKSDNYRDHAVSESGSVLGRIEYRGDGQRFFAEASYYDDDRELAG
SLTAEELAANPRQANAANSSDYQHNLTKAGRLGYEHSLTEHWTLAADFDASDTQVNYISWGGAGETERQLISLTPKAIGR
YQTEAGELKLVTGVDLSRGESEFTSAYMERGNTQEHWAAFAQASVPLTKSLSYVVGGRYAEVQDEIRDQSTFPLGGKLDN
DAHALELGLNYRPVQGHRFYLRAEDNFRFAKVDEQAYTSQASLRPQTGRSYEAGWDYQGAQQALRLSLYRLSLEDEIVFD
PSADTPVGGYFPGANINADESRRYGAMLDWDWQLNDTISLGIDYQYTDAEFTAGLNDGKALSWVAEHSGRMYVSAQFAEY
WSAYVDAAYTGERFVEGDNANMGEQMDAFWLTNAAVSFRKDALIATLRLDNLFDETYAASGFYSDWGNGYYPGEGRKVSL
TLGLKY

Sequences:

>Translated_646_residues
MGTKPSLISLALATSLLSSFASAQSSVDEHLVVIGRQADTPLNIAANVAVITAEDIALSGATSLAGLLRGQSAIQISDSG
TGPVLAMRGFSAGQAANNTLVLVDGRRLNNIDIAAPSLNAVSLSQIERIEVLSGSAGVLYGDQAVGGVINIITRRSQENT
GGASLTGGSFGTLGTAMDVSAALNERWNLFVGGNFDKSDNYRDHAVSESGSVLGRIEYRGDGQRFFAEASYYDDDRELAG
SLTAEELAANPRQANAANSSDYQHNLTKAGRLGYEHSLTEHWTLAADFDASDTQVNYISWGGAGETERQLISLTPKAIGR
YQTEAGELKLVTGVDLSRGESEFTSAYMERGNTQEHWAAFAQASVPLTKSLSYVVGGRYAEVQDEIRDQSTFPLGGKLDN
DAHALELGLNYRPVQGHRFYLRAEDNFRFAKVDEQAYTSQASLRPQTGRSYEAGWDYQGAQQALRLSLYRLSLEDEIVFD
PSADTPVGGYFPGANINADESRRYGAMLDWDWQLNDTISLGIDYQYTDAEFTAGLNDGKALSWVAEHSGRMYVSAQFAEY
WSAYVDAAYTGERFVEGDNANMGEQMDAFWLTNAAVSFRKDALIATLRLDNLFDETYAASGFYSDWGNGYYPGEGRKVSL
TLGLKY
>Mature_645_residues
GTKPSLISLALATSLLSSFASAQSSVDEHLVVIGRQADTPLNIAANVAVITAEDIALSGATSLAGLLRGQSAIQISDSGT
GPVLAMRGFSAGQAANNTLVLVDGRRLNNIDIAAPSLNAVSLSQIERIEVLSGSAGVLYGDQAVGGVINIITRRSQENTG
GASLTGGSFGTLGTAMDVSAALNERWNLFVGGNFDKSDNYRDHAVSESGSVLGRIEYRGDGQRFFAEASYYDDDRELAGS
LTAEELAANPRQANAANSSDYQHNLTKAGRLGYEHSLTEHWTLAADFDASDTQVNYISWGGAGETERQLISLTPKAIGRY
QTEAGELKLVTGVDLSRGESEFTSAYMERGNTQEHWAAFAQASVPLTKSLSYVVGGRYAEVQDEIRDQSTFPLGGKLDND
AHALELGLNYRPVQGHRFYLRAEDNFRFAKVDEQAYTSQASLRPQTGRSYEAGWDYQGAQQALRLSLYRLSLEDEIVFDP
SADTPVGGYFPGANINADESRRYGAMLDWDWQLNDTISLGIDYQYTDAEFTAGLNDGKALSWVAEHSGRMYVSAQFAEYW
SAYVDAAYTGERFVEGDNANMGEQMDAFWLTNAAVSFRKDALIATLRLDNLFDETYAASGFYSDWGNGYYPGEGRKVSLT
LGLKY

Specific function: Probable receptor, tonB-dependent [H]

COG id: COG1629

COG function: function code P; Outer membrane receptor proteins, mostly Fe transport

Gene ontology:

Cell location: Cell outer membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tonB-dependent receptor family [H]

Homologues:

Organism=Escherichia coli, GI1787723, Length=695, Percent_Identity=24.4604316546763, Blast_Score=97, Evalue=4e-21,
Organism=Escherichia coli, GI1790405, Length=155, Percent_Identity=32.258064516129, Blast_Score=75, Evalue=1e-14,
Organism=Escherichia coli, GI1790743, Length=662, Percent_Identity=22.0543806646526, Blast_Score=73, Evalue=5e-14,
Organism=Escherichia coli, GI1788478, Length=133, Percent_Identity=33.8345864661654, Blast_Score=72, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012910
- InterPro:   IPR000531 [H]

Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]

EC number: NA

Molecular weight: Translated: 69996; Mature: 69864

Theoretical pI: Translated: 4.37; Mature: 4.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGTKPSLISLALATSLLSSFASAQSSVDEHLVVIGRQADTPLNIAANVAVITAEDIALSG
CCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCEEEEEEEEEEECCEEECC
ATSLAGLLRGQSAIQISDSGTGPVLAMRGFSAGQAANNTLVLVDGRRLNNIDIAAPSLNA
HHHHHHHHCCCCEEEEECCCCCCEEEEECCCCCCCCCCEEEEEECCEECCEEEECCCCCC
VSLSQIERIEVLSGSAGVLYGDQAVGGVINIITRRSQENTGGASLTGGSFGTLGTAMDVS
EEHHHHHEEEEECCCCCEEECCHHHHHHHHHHHHCCCCCCCCCEECCCCCCCCCHHHHHH
AALNERWNLFVGGNFDKSDNYRDHAVSESGSVLGRIEYRGDGQRFFAEASYYDDDRELAG
HHHCCCEEEEECCCCCCCCCCCHHCCCCCCCEEEEEEECCCCCEEEEECCCCCCHHHHHC
SLTAEELAANPRQANAANSSDYQHNLTKAGRLGYEHSLTEHWTLAADFDASDTQVNYISW
CCCHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCEEEEEEE
GGAGETERQLISLTPKAIGRYQTEAGELKLVTGVDLSRGESEFTSAYMERGNTQEHWAAF
CCCCCCCHHEEEECHHHHCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHCCCCHHHHHHH
AQASVPLTKSLSYVVGGRYAEVQDEIRDQSTFPLGGKLDNDAHALELGLNYRPVQGHRFY
HHCCCCHHHCCHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCEEECCCCEEE
LRAEDNFRFAKVDEQAYTSQASLRPQTGRSYEAGWDYQGAQQALRLSLYRLSLEDEIVFD
EEECCCEEEEEECHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHEEEECCCEEEEC
PSADTPVGGYFPGANINADESRRYGAMLDWDWQLNDTISLGIDYQYTDAEFTAGLNDGKA
CCCCCCCCCCCCCCCCCCCCCCCCCCEEEECEEECCEEEEEEEEEECCCCEECCCCCCCE
LSWVAEHSGRMYVSAQFAEYWSAYVDAAYTGERFVEGDNANMGEQMDAFWLTNAAVSFRK
EEEEECCCCEEEEEEHHHHHHHHHHHHHCCCCEEECCCCCCCCCCHHEEEEEHHHHHHCC
DALIATLRLDNLFDETYAASGFYSDWGNGYYPGEGRKVSLTLGLKY
CEEEEEEEHHHHHHHHHHCCCCCCCCCCCEECCCCCEEEEEEEECC
>Mature Secondary Structure 
GTKPSLISLALATSLLSSFASAQSSVDEHLVVIGRQADTPLNIAANVAVITAEDIALSG
CCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCEEEEEEEEEEECCEEECC
ATSLAGLLRGQSAIQISDSGTGPVLAMRGFSAGQAANNTLVLVDGRRLNNIDIAAPSLNA
HHHHHHHHCCCCEEEEECCCCCCEEEEECCCCCCCCCCEEEEEECCEECCEEEECCCCCC
VSLSQIERIEVLSGSAGVLYGDQAVGGVINIITRRSQENTGGASLTGGSFGTLGTAMDVS
EEHHHHHEEEEECCCCCEEECCHHHHHHHHHHHHCCCCCCCCCEECCCCCCCCCHHHHHH
AALNERWNLFVGGNFDKSDNYRDHAVSESGSVLGRIEYRGDGQRFFAEASYYDDDRELAG
HHHCCCEEEEECCCCCCCCCCCHHCCCCCCCEEEEEEECCCCCEEEEECCCCCCHHHHHC
SLTAEELAANPRQANAANSSDYQHNLTKAGRLGYEHSLTEHWTLAADFDASDTQVNYISW
CCCHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCEEEEEEE
GGAGETERQLISLTPKAIGRYQTEAGELKLVTGVDLSRGESEFTSAYMERGNTQEHWAAF
CCCCCCCHHEEEECHHHHCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHCCCCHHHHHHH
AQASVPLTKSLSYVVGGRYAEVQDEIRDQSTFPLGGKLDNDAHALELGLNYRPVQGHRFY
HHCCCCHHHCCHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCEEECCCCEEE
LRAEDNFRFAKVDEQAYTSQASLRPQTGRSYEAGWDYQGAQQALRLSLYRLSLEDEIVFD
EEECCCEEEEEECHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHEEEECCCEEEEC
PSADTPVGGYFPGANINADESRRYGAMLDWDWQLNDTISLGIDYQYTDAEFTAGLNDGKA
CCCCCCCCCCCCCCCCCCCCCCCCCCEEEECEEECCEEEEEEEEEECCCCEECCCCCCCE
LSWVAEHSGRMYVSAQFAEYWSAYVDAAYTGERFVEGDNANMGEQMDAFWLTNAAVSFRK
EEEEECCCCEEEEEEHHHHHHHHHHHHHCCCCEEECCCCCCCCCCHHEEEEEHHHHHHCC
DALIATLRLDNLFDETYAASGFYSDWGNGYYPGEGRKVSLTLGLKY
CEEEEEEEHHHHHHHHHHCCCCCCCCCCCEECCCCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]