| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119775745
Identifier: 119775745
GI number: 119775745
Start: 3128860
End: 3129789
Strand: Direct
Name: 119775745
Synonym: Sama_2613
Alternate gene names: NA
Gene position: 3128860-3129789 (Clockwise)
Preceding gene: 119775744
Following gene: 119775747
Centisome position: 72.66
GC content: 52.47
Gene sequence:
>930_bases ATGAAAACACTGTACTCACTGTCGCTGCTGTGCCTGCTCGCAAGCCCACTGTTTGCCGCCGAAAAAATCGATAAAAGCCT GGATGTTGGTTCCCAGGTGGTACTGGATATCAGGGTTCAGCGCGGCGAGGTGGAAATAAGCCCCTGGGATAAAAACACCA TTCAGGTGCAGGGCACGCTCGATGAGCTCAGCGAAGGTCTGCTTTTTGAGAATCAGGGCAGCCGCATCCTGCTGGAAGAC AAGATGCCTAAAAGTTATCAGGGCAATAAGAGTAATGGCTCAGAGCTTGTCATCAGGGTTCCCGCTAACCTTACGTTGGC CGGCGAGGGGGTATCTGCAGACTATCGGGTTGATGGGCTGCAAGGTGAGATAGGGCTCAGCACAGTATCGGGCGACATCA AGGCCAATGCACTTGGTGGCAAAGTCACGTTCAATACAGTGTCGGGCGAAGTGGATAGTGAGAAGCTTACCGGCACAGTC AATATTGAGACTGTATCCGGAAGAATCACAGACAAGCATTCCACCAACGATGAAGCCAGCTACAAGTCTGTCAGCGGTGA TATTCATCTAAACAACCAGACGAAAAAAGTCCGTATCGAACAGGTCTCCGGTGATACCGAAGCAAGGCTACCCAACGCCC GAGCCGTGCAATATAACGCCGTTAGCGGTGATGCTGAACTAGCCTTGAAAGGCGATGTGAAGGTGTCGGGTGAATCGGTT AGCGGAGACTTGTCAGTCAAACTGCTTGGCGATGCCGATGTCCGTGTGGCGATTAACGGTGGCCCAAGCGGAAAAATTCA TAACGGCCTGACCGATGACGCCCCCAAAAAGCCCAAGTACGGGCCCGGCAGCACTCTGGATATGGTGCTCGGCGGTGGTA AAGGAGTGATAGAACTCTCCACCCTCAGCGGTAAATTATCGGTGGAATAA
Upstream 100 bases:
>100_bases AACAACTTTGGCAGCTCTGGCTCTGGGTCCAGCGCCGCGAAATTGAACTTTTAACCCAGGGACAAAGGCTGCCAGCCGGC GCCACACAAGGAGATACCCT
Downstream 100 bases:
>100_bases GCGAAGCAACAATAAAAAGGGCCTTCATTGAAGGCCCTTTTTGATATGCAGGTTTATTTCACCGAGGCAATTTCGGCTTC GGTCAGATAACGCCACTCGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 309; Mature: 309
Protein sequence:
>309_residues MKTLYSLSLLCLLASPLFAAEKIDKSLDVGSQVVLDIRVQRGEVEISPWDKNTIQVQGTLDELSEGLLFENQGSRILLED KMPKSYQGNKSNGSELVIRVPANLTLAGEGVSADYRVDGLQGEIGLSTVSGDIKANALGGKVTFNTVSGEVDSEKLTGTV NIETVSGRITDKHSTNDEASYKSVSGDIHLNNQTKKVRIEQVSGDTEARLPNARAVQYNAVSGDAELALKGDVKVSGESV SGDLSVKLLGDADVRVAINGGPSGKIHNGLTDDAPKKPKYGPGSTLDMVLGGGKGVIELSTLSGKLSVE
Sequences:
>Translated_309_residues MKTLYSLSLLCLLASPLFAAEKIDKSLDVGSQVVLDIRVQRGEVEISPWDKNTIQVQGTLDELSEGLLFENQGSRILLED KMPKSYQGNKSNGSELVIRVPANLTLAGEGVSADYRVDGLQGEIGLSTVSGDIKANALGGKVTFNTVSGEVDSEKLTGTV NIETVSGRITDKHSTNDEASYKSVSGDIHLNNQTKKVRIEQVSGDTEARLPNARAVQYNAVSGDAELALKGDVKVSGESV SGDLSVKLLGDADVRVAINGGPSGKIHNGLTDDAPKKPKYGPGSTLDMVLGGGKGVIELSTLSGKLSVE >Mature_309_residues MKTLYSLSLLCLLASPLFAAEKIDKSLDVGSQVVLDIRVQRGEVEISPWDKNTIQVQGTLDELSEGLLFENQGSRILLED KMPKSYQGNKSNGSELVIRVPANLTLAGEGVSADYRVDGLQGEIGLSTVSGDIKANALGGKVTFNTVSGEVDSEKLTGTV NIETVSGRITDKHSTNDEASYKSVSGDIHLNNQTKKVRIEQVSGDTEARLPNARAVQYNAVSGDAELALKGDVKVSGESV SGDLSVKLLGDADVRVAINGGPSGKIHNGLTDDAPKKPKYGPGSTLDMVLGGGKGVIELSTLSGKLSVE
Specific function: Unknown
COG id: COG3595
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 32495; Mature: 32495
Theoretical pI: Translated: 4.78; Mature: 4.78
Prosite motif: PS00430 TONB_DEPENDENT_REC_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.3 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKTLYSLSLLCLLASPLFAAEKIDKSLDVGSQVVLDIRVQRGEVEISPWDKNTIQVQGTL CCHHHHHHHHHHHHCCHHHHHHHHHHCCCCCEEEEEEEEECCEEEECCCCCCEEEEEECH DELSEGLLFENQGSRILLEDKMPKSYQGNKSNGSELVIRVPANLTLAGEGVSADYRVDGL HHHHCCEEEECCCCEEEEECCCCCCCCCCCCCCCEEEEECCCCEEEECCCCCCCEEEECC QGEIGLSTVSGDIKANALGGKVTFNTVSGEVDSEKLTGTVNIETVSGRITDKHSTNDEAS CCCEEEEEECCCEEEEECCCEEEEEEECCCCCCCCEEEEEEEEEEECEEECCCCCCCCCC YKSVSGDIHLNNQTKKVRIEQVSGDTEARLPNARAVQYNAVSGDAELALKGDVKVSGESV EEEECCEEEECCCCEEEEEEEECCCCHHCCCCCEEEEEEEECCCEEEEEECCEEECCCCC SGDLSVKLLGDADVRVAINGGPSGKIHNGLTDDAPKKPKYGPGSTLDMVLGGGKGVIELS CCEEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEE TLSGKLSVE EECCEEECC >Mature Secondary Structure MKTLYSLSLLCLLASPLFAAEKIDKSLDVGSQVVLDIRVQRGEVEISPWDKNTIQVQGTL CCHHHHHHHHHHHHCCHHHHHHHHHHCCCCCEEEEEEEEECCEEEECCCCCCEEEEEECH DELSEGLLFENQGSRILLEDKMPKSYQGNKSNGSELVIRVPANLTLAGEGVSADYRVDGL HHHHCCEEEECCCCEEEEECCCCCCCCCCCCCCCEEEEECCCCEEEECCCCCCCEEEECC QGEIGLSTVSGDIKANALGGKVTFNTVSGEVDSEKLTGTVNIETVSGRITDKHSTNDEAS CCCEEEEEECCCEEEEECCCEEEEEEECCCCCCCCEEEEEEEEEEECEEECCCCCCCCCC YKSVSGDIHLNNQTKKVRIEQVSGDTEARLPNARAVQYNAVSGDAELALKGDVKVSGESV EEEECCEEEECCCCEEEEEEEECCCCHHCCCCCEEEEEEEECCCEEEEEECCEEECCCCC SGDLSVKLLGDADVRVAINGGPSGKIHNGLTDDAPKKPKYGPGSTLDMVLGGGKGVIELS CCEEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEE TLSGKLSVE EECCEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA