Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

Click here to switch to the map view.

The map label for this gene is 119775744

Identifier: 119775744

GI number: 119775744

Start: 3128324

End: 3128863

Strand: Direct

Name: 119775744

Synonym: Sama_2612

Alternate gene names: NA

Gene position: 3128324-3128863 (Clockwise)

Preceding gene: 119775743

Following gene: 119775745

Centisome position: 72.65

GC content: 56.48

Gene sequence:

>540_bases
ATGACCAGTGCTGCCGACAAACGCCTCGACAAGCTGATTGCCGATGCCCCCAAAGAGCTGACGCCAGCAGAATCCAACTG
GGATGCAATTGCCGCAAGGCTCGACCGCCCGCAGCCAACAAAGGCAGGGGAAGACAGAAAAGAGAATAGGCCGGGAAGAT
TGCCCTGGTACGTAACAACTGCCGTTGCCGCGGCGCTGTTGCTAACTTTGGTACCGCAGCTCCCCATTCACAATACGCCC
GAGGTGGATAACAGCCTGTGGCCGCTCATAGAAAGTATTGATCTCGCCCACCGTCAGGAAGTGGCCTCACTTGCTGAATC
ATCCAGCAACGCCTGGCAACAGGTGGGATATCAAGAGCCCGTGGAAGCGGGCTTAAAAGAGCTGCGGGAAGCGGCACGGC
TTATTCTGAGTTCCCTCAAGGCCAATCCACAGGATAAACAACTTTGGCAGCTCTGGCTCTGGGTCCAGCGCCGCGAAATT
GAACTTTTAACCCAGGGACAAAGGCTGCCAGCCGGCGCCACACAAGGAGATACCCTATGA

Upstream 100 bases:

>100_bases
GTTTTTCCCACGAGGAAGTGGCCAGTTTGCTCGGTATATCCACCGGCACCAGCAAGGCACATTACCACAGGGCGCGGGAA
CTGATGAAGGAGATGCTGTC

Downstream 100 bases:

>100_bases
AAACACTGTACTCACTGTCGCTGCTGTGCCTGCTCGCAAGCCCACTGTTTGCCGCCGAAAAAATCGATAAAAGCCTGGAT
GTTGGTTCCCAGGTGGTACT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 179; Mature: 178

Protein sequence:

>179_residues
MTSAADKRLDKLIADAPKELTPAESNWDAIAARLDRPQPTKAGEDRKENRPGRLPWYVTTAVAAALLLTLVPQLPIHNTP
EVDNSLWPLIESIDLAHRQEVASLAESSSNAWQQVGYQEPVEAGLKELREAARLILSSLKANPQDKQLWQLWLWVQRREI
ELLTQGQRLPAGATQGDTL

Sequences:

>Translated_179_residues
MTSAADKRLDKLIADAPKELTPAESNWDAIAARLDRPQPTKAGEDRKENRPGRLPWYVTTAVAAALLLTLVPQLPIHNTP
EVDNSLWPLIESIDLAHRQEVASLAESSSNAWQQVGYQEPVEAGLKELREAARLILSSLKANPQDKQLWQLWLWVQRREI
ELLTQGQRLPAGATQGDTL
>Mature_178_residues
TSAADKRLDKLIADAPKELTPAESNWDAIAARLDRPQPTKAGEDRKENRPGRLPWYVTTAVAAALLLTLVPQLPIHNTPE
VDNSLWPLIESIDLAHRQEVASLAESSSNAWQQVGYQEPVEAGLKELREAARLILSSLKANPQDKQLWQLWLWVQRREIE
LLTQGQRLPAGATQGDTL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19968; Mature: 19837

Theoretical pI: Translated: 5.06; Mature: 5.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
0.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSAADKRLDKLIADAPKELTPAESNWDAIAARLDRPQPTKAGEDRKENRPGRLPWYVTT
CCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCHHCCCCCCCCHHHHH
AVAAALLLTLVPQLPIHNTPEVDNSLWPLIESIDLAHRQEVASLAESSSNAWQQVGYQEP
HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCH
VEAGLKELREAARLILSSLKANPQDKQLWQLWLWVQRREIELLTQGQRLPAGATQGDTL
HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
>Mature Secondary Structure 
TSAADKRLDKLIADAPKELTPAESNWDAIAARLDRPQPTKAGEDRKENRPGRLPWYVTT
CCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCHHCCCCCCCCHHHHH
AVAAALLLTLVPQLPIHNTPEVDNSLWPLIESIDLAHRQEVASLAESSSNAWQQVGYQEP
HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCH
VEAGLKELREAARLILSSLKANPQDKQLWQLWLWVQRREIELLTQGQRLPAGATQGDTL
HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA