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The map label for this gene is rpoE [H]

Identifier: 119775743

GI number: 119775743

Start: 3127773

End: 3128327

Strand: Direct

Name: rpoE [H]

Synonym: Sama_2611

Alternate gene names: 119775743

Gene position: 3127773-3128327 (Clockwise)

Preceding gene: 119775742

Following gene: 119775744

Centisome position: 72.64

GC content: 55.68

Gene sequence:

>555_bases
ATGGAACCCAAGGTGCTCCCAATACCACAGCAGCAATCACAAGATGTGAATGATGCCAGCCTGGCGCAGCAAGCGGCACA
GGGCGATAAAAGCGCCTTTGAAGCCCTGTACCAACGCCACCATAAACGGATCTACGCGCTGGCGCTGCGTCTTGGCGGCG
AACCGAGTCTTGCCGATGAAATATTGCAGGAAAGCTTTGTTCGTCTGTGGCACAAGCTGCCGCAGTTTCGTGGTGAGAGC
CAATTTGGCACCTGGTTTTACTCGCTGGCCCTGAATCAGGCACTAAGCACCCTCAAGCAACATCGCAGCTTTTGGGCCCG
AATGGTGCCCGACTGGCAAATACAGGATGCACCAGAGCACAGTCAAAATGACGATGGTCTCCTGCTCGACCGCCTGATTG
TCAGGCTGCCGGAGCGAGCCCGGCTGGTGTTTGTTCTATTTGCCGTGGAAGGTTTTTCCCACGAGGAAGTGGCCAGTTTG
CTCGGTATATCCACCGGCACCAGCAAGGCACATTACCACAGGGCGCGGGAACTGATGAAGGAGATGCTGTCATGA

Upstream 100 bases:

>100_bases
ATGCTTCAGGAACAATAACTTACAAGGGATGCAAAAAATGTTGCATCCCCACTAAACCTTTCTATCTTGGACATCTGTCT
TATTAAGCATACAAGGACCG

Downstream 100 bases:

>100_bases
CCAGTGCTGCCGACAAACGCCTCGACAAGCTGATTGCCGATGCCCCCAAAGAGCTGACGCCAGCAGAATCCAACTGGGAT
GCAATTGCCGCAAGGCTCGA

Product: ECF subfamily RNA polymerase sigma-24 factor

Products: NA

Alternate protein names: Sigma-24 [H]

Number of amino acids: Translated: 184; Mature: 184

Protein sequence:

>184_residues
MEPKVLPIPQQQSQDVNDASLAQQAAQGDKSAFEALYQRHHKRIYALALRLGGEPSLADEILQESFVRLWHKLPQFRGES
QFGTWFYSLALNQALSTLKQHRSFWARMVPDWQIQDAPEHSQNDDGLLLDRLIVRLPERARLVFVLFAVEGFSHEEVASL
LGISTGTSKAHYHRARELMKEMLS

Sequences:

>Translated_184_residues
MEPKVLPIPQQQSQDVNDASLAQQAAQGDKSAFEALYQRHHKRIYALALRLGGEPSLADEILQESFVRLWHKLPQFRGES
QFGTWFYSLALNQALSTLKQHRSFWARMVPDWQIQDAPEHSQNDDGLLLDRLIVRLPERARLVFVLFAVEGFSHEEVASL
LGISTGTSKAHYHRARELMKEMLS
>Mature_184_residues
MEPKVLPIPQQQSQDVNDASLAQQAAQGDKSAFEALYQRHHKRIYALALRLGGEPSLADEILQESFVRLWHKLPQFRGES
QFGTWFYSLALNQALSTLKQHRSFWARMVPDWQIQDAPEHSQNDDGLLLDRLIVRLPERARLVFVLFAVEGFSHEEVASL
LGISTGTSKAHYHRARELMKEMLS

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in heat shock and oxidative stress response; it is believed to control protein processing

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788926, Length=179, Percent_Identity=29.608938547486, Blast_Score=82, Evalue=3e-17,

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR014286
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 21077; Mature: 21077

Theoretical pI: Translated: 6.98; Mature: 6.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEPKVLPIPQQQSQDVNDASLAQQAAQGDKSAFEALYQRHHKRIYALALRLGGEPSLADE
CCCCCCCCCCHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
ILQESFVRLWHKLPQFRGESQFGTWFYSLALNQALSTLKQHRSFWARMVPDWQIQDAPEH
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
SQNDDGLLLDRLIVRLPERARLVFVLFAVEGFSHEEVASLLGISTGTSKAHYHRARELMK
CCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHH
EMLS
HHHC
>Mature Secondary Structure
MEPKVLPIPQQQSQDVNDASLAQQAAQGDKSAFEALYQRHHKRIYALALRLGGEPSLADE
CCCCCCCCCCHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
ILQESFVRLWHKLPQFRGESQFGTWFYSLALNQALSTLKQHRSFWARMVPDWQIQDAPEH
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
SQNDDGLLLDRLIVRLPERARLVFVLFAVEGFSHEEVASLLGISTGTSKAHYHRARELMK
CCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHH
EMLS
HHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]