Click here to switch to the map view.

The map label for this gene is ocd2 [H]

Identifier: 119775742

GI number: 119775742

Start: 3126737

End: 3127690

Strand: Direct

Name: ocd2 [H]

Synonym: Sama_2610

Alternate gene names: 119775742

Gene position: 3126737-3127690 (Clockwise)

Preceding gene: 119775739

Following gene: 119775743

Centisome position: 72.61

GC content: 53.77

Gene sequence:

>954_bases
ATGAAAATCATCGATGGCAACCAGGTGCAACAAAAGTTGACGTTTCCACCCCTTGTCGAAGCGCTAAGGCAACAACTGTG
CCGCCCATTTACCATGCCCCAGCGCCAGGTGTACGCGCTGTCAGACACTGCCGACAATCAGCACGCCTTTGCCCTGTTGC
CTGCCTGGGATGAAGAAAGCATTGCGGTAAAAGCCTTTACTTACTTACCTGACAATCCAGTGAAAAACCCGGGTTGCGAG
AGTCTGTATTCGCAAATATTGCTCTTCGATAGAAAAACAGGGGTACCGCAGGCTTTGATAGACGGAACCAGCGTCACCTA
CTGGCGCACCGCTGCGACTTCCGCGCTGGCAGCGAGCTTCCTTGCCCGCAAGGACAGCAGCCGTTTGCTAATGTGCGCCA
CCGGCAATCTGGCTGTGTACATGGCACTGGCACACGCCAGTGTGCGTCCAATCAGAGAAATCAGGATCTGGGGAAGGAAT
ACTCAAAAGATTGATTCAACCATCGCCACAATCAGGGCGCAGCGCACCGATATTGAGGTGACGGCAGCTAATGCACTGCA
ACTTGACGTTCCCTGGGCGGACATCATCAGCTGCGCCACCGGTTCCCCCACCCCACTCTTTCCCGGAGAATGGGTCACTC
CCGGCACCCACACTGACTTTGTCGGCAATCACCACAAAGACTGCCGCGAGTGTGATTCTCATCTGATAACAAACTCTCAA
GTCTATGTAGACGCGAGACTCAATGTGTTCAGTGAAGCCGGCGAGCTATTGATCCCTGTATCAGAGGGACGCTTTTCGCT
GGATGAGGTGAGAGCTGAGCTGTCAGAACTCTGTCAGGGCACAGCGCTGGGACGCGTAAATGACAAGGATATTACGATGT
TCAAGAGTGTGGGGTCTGCACTCGCCGATCTCGCTGGTGCGCGACTGCTTTTCAAGATGCTTCAGGAACAATAA

Upstream 100 bases:

>100_bases
TTCAACACCTTTCCTCATATGCCGGTCCAGCTTCAACTGGTTTACTTGCTCAAATAAAAGTACATACAATATCCCATTAT
TTAACTTTATCTGAATCACT

Downstream 100 bases:

>100_bases
CTTACAAGGGATGCAAAAAATGTTGCATCCCCACTAAACCTTTCTATCTTGGACATCTGTCTTATTAAGCATACAAGGAC
CGATGGAACCCAAGGTGCTC

Product: ornithine cyclodeaminase

Products: NA

Alternate protein names: OCD 2 [H]

Number of amino acids: Translated: 317; Mature: 317

Protein sequence:

>317_residues
MKIIDGNQVQQKLTFPPLVEALRQQLCRPFTMPQRQVYALSDTADNQHAFALLPAWDEESIAVKAFTYLPDNPVKNPGCE
SLYSQILLFDRKTGVPQALIDGTSVTYWRTAATSALAASFLARKDSSRLLMCATGNLAVYMALAHASVRPIREIRIWGRN
TQKIDSTIATIRAQRTDIEVTAANALQLDVPWADIISCATGSPTPLFPGEWVTPGTHTDFVGNHHKDCRECDSHLITNSQ
VYVDARLNVFSEAGELLIPVSEGRFSLDEVRAELSELCQGTALGRVNDKDITMFKSVGSALADLAGARLLFKMLQEQ

Sequences:

>Translated_317_residues
MKIIDGNQVQQKLTFPPLVEALRQQLCRPFTMPQRQVYALSDTADNQHAFALLPAWDEESIAVKAFTYLPDNPVKNPGCE
SLYSQILLFDRKTGVPQALIDGTSVTYWRTAATSALAASFLARKDSSRLLMCATGNLAVYMALAHASVRPIREIRIWGRN
TQKIDSTIATIRAQRTDIEVTAANALQLDVPWADIISCATGSPTPLFPGEWVTPGTHTDFVGNHHKDCRECDSHLITNSQ
VYVDARLNVFSEAGELLIPVSEGRFSLDEVRAELSELCQGTALGRVNDKDITMFKSVGSALADLAGARLLFKMLQEQ
>Mature_317_residues
MKIIDGNQVQQKLTFPPLVEALRQQLCRPFTMPQRQVYALSDTADNQHAFALLPAWDEESIAVKAFTYLPDNPVKNPGCE
SLYSQILLFDRKTGVPQALIDGTSVTYWRTAATSALAASFLARKDSSRLLMCATGNLAVYMALAHASVRPIREIRIWGRN
TQKIDSTIATIRAQRTDIEVTAANALQLDVPWADIISCATGSPTPLFPGEWVTPGTHTDFVGNHHKDCRECDSHLITNSQ
VYVDARLNVFSEAGELLIPVSEGRFSLDEVRAELSELCQGTALGRVNDKDITMFKSVGSALADLAGARLLFKMLQEQ

Specific function: Unknown

COG id: COG2423

COG function: function code E; Predicted ornithine cyclodeaminase, mu-crystallin homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ornithine cyclodeaminase family [H]

Homologues:

Organism=Homo sapiens, GI4503065, Length=305, Percent_Identity=29.5081967213115, Blast_Score=119, Evalue=3e-27,
Organism=Homo sapiens, GI62241008, Length=268, Percent_Identity=30.5970149253731, Blast_Score=115, Evalue=4e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016040
- InterPro:   IPR003462 [H]

Pfam domain/function: PF02423 OCD_Mu_crystall [H]

EC number: =4.3.1.12 [H]

Molecular weight: Translated: 34938; Mature: 34938

Theoretical pI: Translated: 5.97; Mature: 5.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIIDGNQVQQKLTFPPLVEALRQQLCRPFTMPQRQVYALSDTADNQHAFALLPAWDEES
CCCCCCCHHHHHCCCCHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCEEEEEEECCCCCC
IAVKAFTYLPDNPVKNPGCESLYSQILLFDRKTGVPQALIDGTSVTYWRTAATSALAASF
EEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHCCCCEEEEHHHHHHHHHHHH
LARKDSSRLLMCATGNLAVYMALAHASVRPIREIRIWGRNTQKIDSTIATIRAQRTDIEV
HHCCCCCCEEEEECCCCEEEHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHCCCEEE
TAANALQLDVPWADIISCATGSPTPLFPGEWVTPGTHTDFVGNHHKDCRECDSHLITNSQ
EECCEEEEECCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCE
VYVDARLNVFSEAGELLIPVSEGRFSLDEVRAELSELCQGTALGRVNDKDITMFKSVGSA
EEEEEEHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
LADLAGARLLFKMLQEQ
HHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKIIDGNQVQQKLTFPPLVEALRQQLCRPFTMPQRQVYALSDTADNQHAFALLPAWDEES
CCCCCCCHHHHHCCCCHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCEEEEEEECCCCCC
IAVKAFTYLPDNPVKNPGCESLYSQILLFDRKTGVPQALIDGTSVTYWRTAATSALAASF
EEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHCCCCEEEEHHHHHHHHHHHH
LARKDSSRLLMCATGNLAVYMALAHASVRPIREIRIWGRNTQKIDSTIATIRAQRTDIEV
HHCCCCCCEEEEECCCCEEEHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHCCCEEE
TAANALQLDVPWADIISCATGSPTPLFPGEWVTPGTHTDFVGNHHKDCRECDSHLITNSQ
EECCEEEEECCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCE
VYVDARLNVFSEAGELLIPVSEGRFSLDEVRAELSELCQGTALGRVNDKDITMFKSVGSA
EEEEEEHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
LADLAGARLLFKMLQEQ
HHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11481432 [H]