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The map label for this gene is yfiO [H]

Identifier: 119775738

GI number: 119775738

Start: 3119410

End: 3120261

Strand: Direct

Name: yfiO [H]

Synonym: Sama_2606

Alternate gene names: 119775738

Gene position: 3119410-3120261 (Clockwise)

Preceding gene: 119775733

Following gene: 119775739

Centisome position: 72.44

GC content: 48.71

Gene sequence:

>852_bases
ATGCTATCTGTTACAATCGGATGTTTTCCATTTTATCGTGAAATGGAAGAATTCTTAACTACAACTTCAAAAGAATTGAA
TTCAAGTATGTATAAATTTGCCAAAGGCTCGGCCGTTGCCTTGTTCGCGCTGGCGCTGGGCGCTTGTAGCAGCTCAGGAA
GTCAGGAAGATCTCGTACTGAGCCAGAAGTCACCTGAGGCACTTTATGCCCAGGCCAGAACCTCCATGGAACTGGGGAAT
TTCTCCAAAGCCGTTAAAAGCCTGGAAGCCCTGGATTCCCGTTTCCCCTTCGGTGCGCATAAGACTCAGGTTCAGTTGGA
CATGATCTATGCCTATTATAAGCTGGACGACACTCCCCAGGCGATTGCCAACATTGACCGCTTCCTGCGCCTCAACCCTA
CTCACCCCGATGTAGACTATGTTCAGTATATGCGGGGCTTGGTCAACATGCAGGCCGACAGTTATCTGTTCCATGACATG
ATGAACATAGATCGTACCGATCGCGATCCCAAAAATGCCATGGATGCCTTCAAGGACTTTGAGCGTCTTATCAAGACCTA
TCCAAACAGCAAGTATGCGGCCGATGCCCATCAACGGATGCAGTTTTTGAAAAACCGTTTGGCTCGTTACTCCATTCAGG
TAGCCGAATACTACGTCAAGATGAATGCCTGGAGTGCCGCAGCCGTTCGTGCTCAAACTGTGATGGAGTCTTTCCCGGGT
ACGCCTTCAACAGAACGTGCGCTGGAAATTATGGCCCAGTCCTACGATGAGCTTGGCCAGGAACAGCTTAAAAAGCATGT
CCTGATGGTGATGCAGGAAAATTTCCCTGCCAATGAGATGCTGCAAAACTAA

Upstream 100 bases:

>100_bases
TGATCCAGTCTCAGCCCCGTTTGTGTTGCTGAAATCTCGCTTTTTAGATTAATCTCTTGGGTCATGGGAACCGTACCCCG
GTATCGGGGTCCAAATTGGT

Downstream 100 bases:

>100_bases
GGTCTTTGCACCTTTCATAACGCCCGGCTATAGACCGGGCGTTGTTTTTTCGGCCTTTAACCCGAATTTTTCAACCTTTC
CTCTACCACAACCCCTTATG

Product: putative lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 283; Mature: 283

Protein sequence:

>283_residues
MLSVTIGCFPFYREMEEFLTTTSKELNSSMYKFAKGSAVALFALALGACSSSGSQEDLVLSQKSPEALYAQARTSMELGN
FSKAVKSLEALDSRFPFGAHKTQVQLDMIYAYYKLDDTPQAIANIDRFLRLNPTHPDVDYVQYMRGLVNMQADSYLFHDM
MNIDRTDRDPKNAMDAFKDFERLIKTYPNSKYAADAHQRMQFLKNRLARYSIQVAEYYVKMNAWSAAAVRAQTVMESFPG
TPSTERALEIMAQSYDELGQEQLKKHVLMVMQENFPANEMLQN

Sequences:

>Translated_283_residues
MLSVTIGCFPFYREMEEFLTTTSKELNSSMYKFAKGSAVALFALALGACSSSGSQEDLVLSQKSPEALYAQARTSMELGN
FSKAVKSLEALDSRFPFGAHKTQVQLDMIYAYYKLDDTPQAIANIDRFLRLNPTHPDVDYVQYMRGLVNMQADSYLFHDM
MNIDRTDRDPKNAMDAFKDFERLIKTYPNSKYAADAHQRMQFLKNRLARYSIQVAEYYVKMNAWSAAAVRAQTVMESFPG
TPSTERALEIMAQSYDELGQEQLKKHVLMVMQENFPANEMLQN
>Mature_283_residues
MLSVTIGCFPFYREMEEFLTTTSKELNSSMYKFAKGSAVALFALALGACSSSGSQEDLVLSQKSPEALYAQARTSMELGN
FSKAVKSLEALDSRFPFGAHKTQVQLDMIYAYYKLDDTPQAIANIDRFLRLNPTHPDVDYVQYMRGLVNMQADSYLFHDM
MNIDRTDRDPKNAMDAFKDFERLIKTYPNSKYAADAHQRMQFLKNRLARYSIQVAEYYVKMNAWSAAAVRAQTVMESFPG
TPSTERALEIMAQSYDELGQEQLKKHVLMVMQENFPANEMLQN

Specific function: Unknown

COG id: COG4105

COG function: function code R; DNA uptake lipoprotein

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0169 (ComL) family [H]

Homologues:

Organism=Escherichia coli, GI1788947, Length=237, Percent_Identity=45.1476793248945, Blast_Score=221, Evalue=6e-59,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017689
- InterPro:   IPR011990 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 32283; Mature: 32283

Theoretical pI: Translated: 6.05; Mature: 6.05

Prosite motif: PS50005 TPR L=RR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
6.0 %Met     (Translated Protein)
6.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
6.0 %Met     (Mature Protein)
6.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSVTIGCFPFYREMEEFLTTTSKELNSSMYKFAKGSAVALFALALGACSSSGSQEDLVL
CCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCEEE
SQKSPEALYAQARTSMELGNFSKAVKSLEALDSRFPFGAHKTQVQLDMIYAYYKLDDTPQ
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCHH
AIANIDRFLRLNPTHPDVDYVQYMRGLVNMQADSYLFHDMMNIDRTDRDPKNAMDAFKDF
HHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
ERLIKTYPNSKYAADAHQRMQFLKNRLARYSIQVAEYYVKMNAWSAAAVRAQTVMESFPG
HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCC
TPSTERALEIMAQSYDELGQEQLKKHVLMVMQENFPANEMLQN
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCC
>Mature Secondary Structure
MLSVTIGCFPFYREMEEFLTTTSKELNSSMYKFAKGSAVALFALALGACSSSGSQEDLVL
CCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCEEE
SQKSPEALYAQARTSMELGNFSKAVKSLEALDSRFPFGAHKTQVQLDMIYAYYKLDDTPQ
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCHH
AIANIDRFLRLNPTHPDVDYVQYMRGLVNMQADSYLFHDMMNIDRTDRDPKNAMDAFKDF
HHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
ERLIKTYPNSKYAADAHQRMQFLKNRLARYSIQVAEYYVKMNAWSAAAVRAQTVMESFPG
HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCC
TPSTERALEIMAQSYDELGQEQLKKHVLMVMQENFPANEMLQN
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]