Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

Click here to switch to the map view.

The map label for this gene is 119775731

Identifier: 119775731

GI number: 119775731

Start: 3105253

End: 3106254

Strand: Reverse

Name: 119775731

Synonym: Sama_2599

Alternate gene names: NA

Gene position: 3106254-3105253 (Counterclockwise)

Preceding gene: 119775732

Following gene: 119775729

Centisome position: 72.14

GC content: 46.51

Gene sequence:

>1002_bases
ATGAGGTGTTTAAAGTTCGTCATACTATTTTTCTGCGCATTTTTAATGGCTTGCGGAGAAAGCAATACTATTGATGGCAA
TCATTCGCCAACTATCCCTGCAAGTGGGAATCAAGCTGGCACCCTGAGTATCGATATATCCGACTCGCCTATGAGTGGGG
TCGTCGGGGTCATAATTCAGCTGAATGAATTGGTGATGACCGATGAACTCAATAACCAGCATCGCTATTCATTGAAAGAT
AGAAAATTTAATCTTCTGGACTATCAGGGAAAAAAGAGTATCAGGATTGTTGATGGGTTGAGTGTTCCGACAGGTAATTA
CCATGATGTTCATATGACAGTGATAGCAGGGGATGGTAATAACGGTTGCTACGTTGAGGATGGCCAGGGTATCCATCCTA
TGCAGGTACAGGAAGGGGTGCTTCCTCTCATGAATTTTTCTGTGTCAGCCAACCAACACCAGAGCTTTACTATGGAGATT
GGACTCTATCTGGGGCTCAATCATGATGATGACCATAACTACACATTGCGCCATCATGGCAGCTGGTCGGTAGATAATCA
TGTGATGGGGCATTTGCTGGGCGAGATGGATCCTCAGTGGATAGCAGATTGTGAAACCGCCAATGCTGTAATGCTTCCTG
CCAGCGGTTCTTTTAGTCACTTAGCCTACCTATACCCTGATTCAGTTAACAGCCTCGCACAAATGGGCGATATGCATGAC
TCAACCCCTGAGGGACATGTTGCTCCCATTGCTGTCGCTCCTCTCAGGCAAGATACCTCTGGCCATTGGTTCTTCGAGAT
GGGGTATTTACCGGAAGGGATGTATCGTGTTGGCTATAGCTGCCTCGGTAATTTAGATAACCCGCATGCAGATGATATCC
AGCATGGTTCATTTTCCATGTTTGCTGACGCAGGTTTTGTGAGGATCAGCGCCGGTGTAAATGGCGGGACTGAAACTGTA
ATGCAGTGCGGTAATGGAAATGGTGGTCATCACGGAGGATGA

Upstream 100 bases:

>100_bases
AATAGATGTTTTACTGCTTGATGAGGATCACAATTTTTAACTGCCAGCGGCCGGATGATGTATGGCTATTCAGCATCGCT
AAGCCAGTTCGGGGGGTGAA

Downstream 100 bases:

>100_bases
CAGCGGAAGTTCGTAACGGCTCAGTCACAGTTGGCTACCTGTGCTTGTCAGCCAACCCTGATTCCTCTCCGGTGAGCACA
GCGAATAGACAAACAGGTCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 333; Mature: 333

Protein sequence:

>333_residues
MRCLKFVILFFCAFLMACGESNTIDGNHSPTIPASGNQAGTLSIDISDSPMSGVVGVIIQLNELVMTDELNNQHRYSLKD
RKFNLLDYQGKKSIRIVDGLSVPTGNYHDVHMTVIAGDGNNGCYVEDGQGIHPMQVQEGVLPLMNFSVSANQHQSFTMEI
GLYLGLNHDDDHNYTLRHHGSWSVDNHVMGHLLGEMDPQWIADCETANAVMLPASGSFSHLAYLYPDSVNSLAQMGDMHD
STPEGHVAPIAVAPLRQDTSGHWFFEMGYLPEGMYRVGYSCLGNLDNPHADDIQHGSFSMFADAGFVRISAGVNGGTETV
MQCGNGNGGHHGG

Sequences:

>Translated_333_residues
MRCLKFVILFFCAFLMACGESNTIDGNHSPTIPASGNQAGTLSIDISDSPMSGVVGVIIQLNELVMTDELNNQHRYSLKD
RKFNLLDYQGKKSIRIVDGLSVPTGNYHDVHMTVIAGDGNNGCYVEDGQGIHPMQVQEGVLPLMNFSVSANQHQSFTMEI
GLYLGLNHDDDHNYTLRHHGSWSVDNHVMGHLLGEMDPQWIADCETANAVMLPASGSFSHLAYLYPDSVNSLAQMGDMHD
STPEGHVAPIAVAPLRQDTSGHWFFEMGYLPEGMYRVGYSCLGNLDNPHADDIQHGSFSMFADAGFVRISAGVNGGTETV
MQCGNGNGGHHGG
>Mature_333_residues
MRCLKFVILFFCAFLMACGESNTIDGNHSPTIPASGNQAGTLSIDISDSPMSGVVGVIIQLNELVMTDELNNQHRYSLKD
RKFNLLDYQGKKSIRIVDGLSVPTGNYHDVHMTVIAGDGNNGCYVEDGQGIHPMQVQEGVLPLMNFSVSANQHQSFTMEI
GLYLGLNHDDDHNYTLRHHGSWSVDNHVMGHLLGEMDPQWIADCETANAVMLPASGSFSHLAYLYPDSVNSLAQMGDMHD
STPEGHVAPIAVAPLRQDTSGHWFFEMGYLPEGMYRVGYSCLGNLDNPHADDIQHGSFSMFADAGFVRISAGVNGGTETV
MQCGNGNGGHHGG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 36146; Mature: 36146

Theoretical pI: Translated: 4.94; Mature: 4.94

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
5.1 %Met     (Translated Protein)
7.2 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
5.1 %Met     (Mature Protein)
7.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRCLKFVILFFCAFLMACGESNTIDGNHSPTIPASGNQAGTLSIDISDSPMSGVVGVIIQ
CHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCHHEEEEE
LNELVMTDELNNQHRYSLKDRKFNLLDYQGKKSIRIVDGLSVPTGNYHDVHMTVIAGDGN
CCCEEEECCCCCCCEEEECCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEEEEEEECCC
NGCYVEDGQGIHPMQVQEGVLPLMNFSVSANQHQSFTMEIGLYLGLNHDDDHNYTLRHHG
CCEEEECCCCCCCHHHHCCCCEEHEEEECCCCCCEEEEEEEEEEECCCCCCCCEEEEECC
SWSVDNHVMGHLLGEMDPQWIADCETANAVMLPASGSFSHLAYLYPDSVNSLAQMGDMHD
CCCCCHHHHHHHHHCCCHHHHCCCCCCCEEEEECCCCCCEEEEECCCCHHHHHHHCCCCC
STPEGHVAPIAVAPLRQDTSGHWFFEMGYLPEGMYRVGYSCLGNLDNPHADDIQHGSFSM
CCCCCCEEEEEEECCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCCEEE
FADAGFVRISAGVNGGTETVMQCGNGNGGHHGG
EECCCEEEEECCCCCCHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MRCLKFVILFFCAFLMACGESNTIDGNHSPTIPASGNQAGTLSIDISDSPMSGVVGVIIQ
CHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCHHEEEEE
LNELVMTDELNNQHRYSLKDRKFNLLDYQGKKSIRIVDGLSVPTGNYHDVHMTVIAGDGN
CCCEEEECCCCCCCEEEECCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEEEEEEECCC
NGCYVEDGQGIHPMQVQEGVLPLMNFSVSANQHQSFTMEIGLYLGLNHDDDHNYTLRHHG
CCEEEECCCCCCCHHHHCCCCEEHEEEECCCCCCEEEEEEEEEEECCCCCCCCEEEEECC
SWSVDNHVMGHLLGEMDPQWIADCETANAVMLPASGSFSHLAYLYPDSVNSLAQMGDMHD
CCCCCHHHHHHHHHCCCHHHHCCCCCCCEEEEECCCCCCEEEEECCCCHHHHHHHCCCCC
STPEGHVAPIAVAPLRQDTSGHWFFEMGYLPEGMYRVGYSCLGNLDNPHADDIQHGSFSM
CCCCCCEEEEEEECCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCCEEE
FADAGFVRISAGVNGGTETVMQCGNGNGGHHGG
EECCCEEEEECCCCCCHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA