| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is pssA [H]
Identifier: 119775732
GI number: 119775732
Start: 3112729
End: 3113580
Strand: Reverse
Name: pssA [H]
Synonym: Sama_2600
Alternate gene names: 119775732
Gene position: 3113580-3112729 (Counterclockwise)
Preceding gene: 119775734
Following gene: 119775731
Centisome position: 72.31
GC content: 50.35
Gene sequence:
>852_bases ATGCAAAATATTGACAAGCCAACAGTAAAAAATCGCGGTATCTATTTGCTGCCTAACCTTTTTACCACTGCCGGATTGTT TTCTGGCTTCTACGCCGTAATCGCGTCCATGAATGGCCAATTTGAATCTGCAGCCATTGCAGTGTTTGTCGCCATGCTGT GCGATGGGCTCGATGGCAGAGTGGCAAGGTTAACCAATACCCAGAGTGAATTTGGCGCCGAGTACGACAGCATGGCCGAT ATGGTGTCATTCGGAATGGCACCGGCACTGATAGCCTATAACTGGGCGCTGTCAGACCTTGGCAAAATTGGATGGCTCGC TGCCTTTATATACTGTGCCGGGGCGGCGTTACGTCTTGCCAGGTTTAATACGCAGGTTGGTGTCGCAGACAAACGATGGT TTCAGGGGCTGGCAAGCCCGGCTGCGGCGGCCGTGATCGCTGGGACTGTGTGGCTTGGAAACCAATATCGCATTGAAGCA GACTCAGTGAGCTATCTGTTCGCCGTGGTTACCATCTGCACAGGGCTACTGATGGTCAGTAACTTCCGTTATCACTCCTT TAAAGAAGTCGACTGGCGTGGCAAGGTCAACTTTATCGTTATCCTGTTGGTGGTCGGGGTCTTTGTAGTGATCTCGGTAG AACCTGCATTAATCCTGTGTCTGGGTTTTTATCTTTATGCGTTGTCTGGCCCAGTGATTACCGTCCGTTCGGTACGTAAG CTTAAGGTTTCTCATGTGGTCGGCGACGATGAAGACGAGCATGAGCAGGGATACTCGCAGGACTCTCCGGATAACCAAGT AAAAGCGCAAGCTGACAAAGGGGAATTCGATAAATCAGCGAAAGACGATTAA
Upstream 100 bases:
>100_bases GGTACCTGAATTCCATAAGGCCCTGCCTCCATAAAGCACTCGCCTGTGATTGGCGAAAATGTGGTATCTTGATTCGGTGT AACTTAATGATAACCAGTGT
Downstream 100 bases:
>100_bases CCTCGTACTGCTAAATATCGCTATGCCCGATAGCTTTCACATTAAAAACGCCGCCCAGCGGCGTTTTTAATTTGGAAAAA TTGCCGAAACTTGCCCATAC
Product: CDP-diacylglycerol--serine O-phosphatidyltransferase
Products: NA
Alternate protein names: Phosphatidylserine synthase [H]
Number of amino acids: Translated: 283; Mature: 283
Protein sequence:
>283_residues MQNIDKPTVKNRGIYLLPNLFTTAGLFSGFYAVIASMNGQFESAAIAVFVAMLCDGLDGRVARLTNTQSEFGAEYDSMAD MVSFGMAPALIAYNWALSDLGKIGWLAAFIYCAGAALRLARFNTQVGVADKRWFQGLASPAAAAVIAGTVWLGNQYRIEA DSVSYLFAVVTICTGLLMVSNFRYHSFKEVDWRGKVNFIVILLVVGVFVVISVEPALILCLGFYLYALSGPVITVRSVRK LKVSHVVGDDEDEHEQGYSQDSPDNQVKAQADKGEFDKSAKDD
Sequences:
>Translated_283_residues MQNIDKPTVKNRGIYLLPNLFTTAGLFSGFYAVIASMNGQFESAAIAVFVAMLCDGLDGRVARLTNTQSEFGAEYDSMAD MVSFGMAPALIAYNWALSDLGKIGWLAAFIYCAGAALRLARFNTQVGVADKRWFQGLASPAAAAVIAGTVWLGNQYRIEA DSVSYLFAVVTICTGLLMVSNFRYHSFKEVDWRGKVNFIVILLVVGVFVVISVEPALILCLGFYLYALSGPVITVRSVRK LKVSHVVGDDEDEHEQGYSQDSPDNQVKAQADKGEFDKSAKDD >Mature_283_residues MQNIDKPTVKNRGIYLLPNLFTTAGLFSGFYAVIASMNGQFESAAIAVFVAMLCDGLDGRVARLTNTQSEFGAEYDSMAD MVSFGMAPALIAYNWALSDLGKIGWLAAFIYCAGAALRLARFNTQVGVADKRWFQGLASPAAAAVIAGTVWLGNQYRIEA DSVSYLFAVVTICTGLLMVSNFRYHSFKEVDWRGKVNFIVILLVVGVFVVISVEPALILCLGFYLYALSGPVITVRSVRK LKVSHVVGDDEDEHEQGYSQDSPDNQVKAQADKGEFDKSAKDD
Specific function: Unknown
COG id: COG1183
COG function: function code I; Phosphatidylserine synthase
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the CDP-alcohol phosphatidyltransferase class-I family [H]
Homologues:
Organism=Saccharomyces cerevisiae, GI6320864, Length=139, Percent_Identity=37.410071942446, Blast_Score=86, Evalue=5e-18,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004533 - InterPro: IPR000462 [H]
Pfam domain/function: PF01066 CDP-OH_P_transf [H]
EC number: =2.7.8.8 [H]
Molecular weight: Translated: 30832; Mature: 30832
Theoretical pI: Translated: 5.08; Mature: 5.08
Prosite motif: PS00379 CDP_ALCOHOL_P_TRANSF
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQNIDKPTVKNRGIYLLPNLFTTAGLFSGFYAVIASMNGQFESAAIAVFVAMLCDGLDGR CCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCC VARLTNTQSEFGAEYDSMADMVSFGMAPALIAYNWALSDLGKIGWLAAFIYCAGAALRLA EEHHCCCHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RFNTQVGVADKRWFQGLASPAAAAVIAGTVWLGNQYRIEADSVSYLFAVVTICTGLLMVS HHCCCCCCCHHHHHHHHCCHHHHHHHHHHEEECCEEEECHHHHHHHHHHHHHHHHHHHHH NFRYHSFKEVDWRGKVNFIVILLVVGVFVVISVEPALILCLGFYLYALSGPVITVRSVRK CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCEEEEHHHHH LKVSHVVGDDEDEHEQGYSQDSPDNQVKAQADKGEFDKSAKDD HHHHHHCCCCCHHHHCCCCCCCCCCCEEECCCCCCCCCCCCCC >Mature Secondary Structure MQNIDKPTVKNRGIYLLPNLFTTAGLFSGFYAVIASMNGQFESAAIAVFVAMLCDGLDGR CCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCC VARLTNTQSEFGAEYDSMADMVSFGMAPALIAYNWALSDLGKIGWLAAFIYCAGAALRLA EEHHCCCHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RFNTQVGVADKRWFQGLASPAAAAVIAGTVWLGNQYRIEADSVSYLFAVVTICTGLLMVS HHCCCCCCCHHHHHHHHCCHHHHHHHHHHEEECCEEEECHHHHHHHHHHHHHHHHHHHHH NFRYHSFKEVDWRGKVNFIVILLVVGVFVVISVEPALILCLGFYLYALSGPVITVRSVRK CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCEEEEHHHHH LKVSHVVGDDEDEHEQGYSQDSPDNQVKAQADKGEFDKSAKDD HHHHHHCCCCCHHHHCCCCCCCCCCCEEECCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 9923682 [H]