| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is nadD
Identifier: 119775717
GI number: 119775717
Start: 3093820
End: 3094470
Strand: Direct
Name: nadD
Synonym: Sama_2585
Alternate gene names: 119775717
Gene position: 3093820-3094470 (Clockwise)
Preceding gene: 119775716
Following gene: 119775718
Centisome position: 71.85
GC content: 56.22
Gene sequence:
>651_bases ATGACTAAGCAGCCTAATGCAAAGCGGCATACAGCTCTGCTCGGCGGCACCTTTGACCCGCCTCACTTTGGCCATATCAG GCCACTGCTGGATGTGCTTAAGCACTGGCCATTGCAGGATTGTTGGCTGTTGCCAAATCATATTCCGCCCCACAAACCCG GCACCCATGCCAGCCCGAAGGCAAGATTGGAAATGATTGACGCGCTGTGCCGGGAGTTCCCGGCATTCAGCCTGTGCGAC GTCGAGCTTCGCCGCGACGAACCCAGTTACACGGTCAACACTCTCAGGCAGTTGAGGGAACTTTATCCCGACAGGGTGTT CTACTTTGTCATGGGGATGGATTCTTTTCTGTCGCTGGATAAGTGGTTTGAGTGGCAGCAACTTTTTGAACTCTGCCATC TGGTGGTGTGTGCCCGGCCCGGTTATCAATTGGCAGCCGACCACGGCATGGCAGAGGTCCTTGCGAACAGACAACACACA GAAGCCGACTTACCGGCAGAGGACAGCGGTAAAGTGTTGATCGCTGACATCCGTGAGCAAGACATTTCCTCCACCGATAT CCGCACGGCGTTGGCCGAGCGGCGGGATATTCGCCAGTTAGTGCCAGAGTCAGTGGCCCGGGTGATTGAGACCCAGGGCC TGTACCGCTAA
Upstream 100 bases:
>100_bases CTTAAACAGGGCGGAGAAGAGGACTGGACACTGCTGACTCACCTTTGCCTGCTCTTTGATGCCAGTGCCCACAGCGCTCT GGTGGATACCCGGGGTTGAT
Downstream 100 bases:
>100_bases GCGGTGTATTCCACCGCGGGCTGCTGCTATACTGTCGCGCTCTTTTTTAGGAAACACATGGGGTAATTTCGCGTGCAAAG CGAAGAACTGAAGCAATTTG
Product: nicotinate-nucleotide adenylyltransferase
Products: NA
Alternate protein names: Deamido-NAD(+) diphosphorylase; Deamido-NAD(+) pyrophosphorylase; Nicotinate mononucleotide adenylyltransferase; NaMN adenylyltransferase
Number of amino acids: Translated: 216; Mature: 215
Protein sequence:
>216_residues MTKQPNAKRHTALLGGTFDPPHFGHIRPLLDVLKHWPLQDCWLLPNHIPPHKPGTHASPKARLEMIDALCREFPAFSLCD VELRRDEPSYTVNTLRQLRELYPDRVFYFVMGMDSFLSLDKWFEWQQLFELCHLVVCARPGYQLAADHGMAEVLANRQHT EADLPAEDSGKVLIADIREQDISSTDIRTALAERRDIRQLVPESVARVIETQGLYR
Sequences:
>Translated_216_residues MTKQPNAKRHTALLGGTFDPPHFGHIRPLLDVLKHWPLQDCWLLPNHIPPHKPGTHASPKARLEMIDALCREFPAFSLCD VELRRDEPSYTVNTLRQLRELYPDRVFYFVMGMDSFLSLDKWFEWQQLFELCHLVVCARPGYQLAADHGMAEVLANRQHT EADLPAEDSGKVLIADIREQDISSTDIRTALAERRDIRQLVPESVARVIETQGLYR >Mature_215_residues TKQPNAKRHTALLGGTFDPPHFGHIRPLLDVLKHWPLQDCWLLPNHIPPHKPGTHASPKARLEMIDALCREFPAFSLCDV ELRRDEPSYTVNTLRQLRELYPDRVFYFVMGMDSFLSLDKWFEWQQLFELCHLVVCARPGYQLAADHGMAEVLANRQHTE ADLPAEDSGKVLIADIREQDISSTDIRTALAERRDIRQLVPESVARVIETQGLYR
Specific function: Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
COG id: COG1057
COG function: function code H; Nicotinic acid mononucleotide adenylyltransferase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the nadD family
Homologues:
Organism=Escherichia coli, GI1786858, Length=212, Percent_Identity=36.3207547169811, Blast_Score=142, Evalue=2e-35,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NADD_SHEAM (A1S8T1)
Other databases:
- EMBL: CP000507 - RefSeq: YP_928457.1 - ProteinModelPortal: A1S8T1 - SMR: A1S8T1 - STRING: A1S8T1 - GeneID: 4604832 - GenomeReviews: CP000507_GR - KEGG: saz:Sama_2585 - NMPDR: fig|326297.7.peg.2423 - eggNOG: COG1057 - HOGENOM: HBG739448 - OMA: LLGWDAF - PhylomeDB: A1S8T1 - HAMAP: MF_00244 - InterPro: IPR004821 - InterPro: IPR004820 - InterPro: IPR005248 - InterPro: IPR014729 - Gene3D: G3DSA:3.40.50.620 - PANTHER: PTHR12039 - TIGRFAMs: TIGR00125 - TIGRFAMs: TIGR00482
Pfam domain/function: PF01467 CTP_transf_2
EC number: =2.7.7.18
Molecular weight: Translated: 24876; Mature: 24745
Theoretical pI: Translated: 6.51; Mature: 6.51
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.3 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 2.3 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTKQPNAKRHTALLGGTFDPPHFGHIRPLLDVLKHWPLQDCWLLPNHIPPHKPGTHASPK CCCCCCCHHHHHEECCCCCCCCCCHHHHHHHHHHHCCCCHHEECCCCCCCCCCCCCCCHH ARLEMIDALCREFPAFSLCDVELRRDEPSYTVNTLRQLRELYPDRVFYFVMGMDSFLSLD HHHHHHHHHHHHCCCCCEECHHHCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH KWFEWQQLFELCHLVVCARPGYQLAADHGMAEVLANRQHTEADLPAEDSGKVLIADIREQ HHHHHHHHHHHHHHHHHCCCCCHHHHHCCHHHHHHCCCCCCCCCCCCCCCCEEEEECCCC DISSTDIRTALAERRDIRQLVPESVARVIETQGLYR CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure TKQPNAKRHTALLGGTFDPPHFGHIRPLLDVLKHWPLQDCWLLPNHIPPHKPGTHASPK CCCCCCHHHHHEECCCCCCCCCCHHHHHHHHHHHCCCCHHEECCCCCCCCCCCCCCCHH ARLEMIDALCREFPAFSLCDVELRRDEPSYTVNTLRQLRELYPDRVFYFVMGMDSFLSLD HHHHHHHHHHHHCCCCCEECHHHCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH KWFEWQQLFELCHLVVCARPGYQLAADHGMAEVLANRQHTEADLPAEDSGKVLIADIREQ HHHHHHHHHHHHHHHHHCCCCCHHHHHCCHHHHHHCCCCCCCCCCCCCCCCEEEEECCCC DISSTDIRTALAERRDIRQLVPESVARVIETQGLYR CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA