| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is bfr [H]
Identifier: 119775662
GI number: 119775662
Start: 3040067
End: 3040537
Strand: Reverse
Name: bfr [H]
Synonym: Sama_2530
Alternate gene names: 119775662
Gene position: 3040537-3040067 (Counterclockwise)
Preceding gene: 119775663
Following gene: 119775661
Centisome position: 70.61
GC content: 49.47
Gene sequence:
>471_bases ATGAAAGGCCATGCCAGTGTGGTAAGCCACCTCAACAAGGTATTGACTGCCGAGCTTACTGCAATCAATCAATATTTCCT TCATGCCCGGATGTTCAAAAACTGGGGGCTGGAAAAGCTCAACAGCAAGGATTACAAAAAATCCATCGAAGACATGAAGC ATGCCGACAAACTGATTGAGCGGGTGCTGTTTCTTGAGGGCTTGCCTAACCTCCAGGCATTGGGAAAGCTGCGTATCGGT GAACATTCAGAAGAAATGCTTGGCTGTGACAAGAGCATGCTGGAGGAGCAGTTGCCACTGCTGCGTGCCGCCATCGCCGA ATGTGAAAAACTGCAGGACTATGTAAGCCGCGATATCCTCGAAGACATTCTTGAAGACGAGGAAGAGCATCTCGACTGGC TCGAGTCCCAGTTTGAGCTTATCCGCCTCACCGGCATTCAAAACTACTTGCAGTCGCAAATGGACGATTGA
Upstream 100 bases:
>100_bases GATGTTATTGATATTAAAGGAAAAGTTGATTATTCGGTCCGACTGTACTAGGGTTGAAATTGATGTAGATCAATTTTCAT CCAACCAAGGACGTTTGCTT
Downstream 100 bases:
>100_bases AGGAGATCATGATGAAAGGTCATCAGGAAGTCATAGATGCGCTGAATGGTTTGCTTACCGGTGAATTATCGGCAATGGAT CAGTATTTTGTGCATGCCAG
Product: bacterioferritin subunit 2
Products: NA
Alternate protein names: BFR; Cytochrome b-557.5 [H]
Number of amino acids: Translated: 156; Mature: 156
Protein sequence:
>156_residues MKGHASVVSHLNKVLTAELTAINQYFLHARMFKNWGLEKLNSKDYKKSIEDMKHADKLIERVLFLEGLPNLQALGKLRIG EHSEEMLGCDKSMLEEQLPLLRAAIAECEKLQDYVSRDILEDILEDEEEHLDWLESQFELIRLTGIQNYLQSQMDD
Sequences:
>Translated_156_residues MKGHASVVSHLNKVLTAELTAINQYFLHARMFKNWGLEKLNSKDYKKSIEDMKHADKLIERVLFLEGLPNLQALGKLRIG EHSEEMLGCDKSMLEEQLPLLRAAIAECEKLQDYVSRDILEDILEDEEEHLDWLESQFELIRLTGIQNYLQSQMDD >Mature_156_residues MKGHASVVSHLNKVLTAELTAINQYFLHARMFKNWGLEKLNSKDYKKSIEDMKHADKLIERVLFLEGLPNLQALGKLRIG EHSEEMLGCDKSMLEEQLPLLRAAIAECEKLQDYVSRDILEDILEDEEEHLDWLESQFELIRLTGIQNYLQSQMDD
Specific function: May perform analogous functions in iron detoxification and storage to that of animal ferritins [H]
COG id: COG2193
COG function: function code P; Bacterioferritin (cytochrome b1)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ferritin-like diiron domain [H]
Homologues:
Organism=Escherichia coli, GI1789733, Length=154, Percent_Identity=59.0909090909091, Blast_Score=187, Evalue=2e-49,
Paralogues:
None
Copy number: 1639 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002024 - InterPro: IPR009040 - InterPro: IPR012347 - InterPro: IPR009078 - InterPro: IPR008331 [H]
Pfam domain/function: PF00210 Ferritin [H]
EC number: NA
Molecular weight: Translated: 18129; Mature: 18129
Theoretical pI: Translated: 4.64; Mature: 4.64
Prosite motif: PS50905 FERRITIN_LIKE ; PS00549 BACTERIOFERRITIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 5.1 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 3.8 %Met (Mature Protein) 5.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKGHASVVSHLNKVLTAELTAINQYFLHARMFKNWGLEKLNSKDYKKSIEDMKHADKLIE CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHHHH RVLFLEGLPNLQALGKLRIGEHSEEMLGCDKSMLEEQLPLLRAAIAECEKLQDYVSRDIL HHHHHHCCCCHHHHHHHHCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EDILEDEEEHLDWLESQFELIRLTGIQNYLQSQMDD HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MKGHASVVSHLNKVLTAELTAINQYFLHARMFKNWGLEKLNSKDYKKSIEDMKHADKLIE CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHHHH RVLFLEGLPNLQALGKLRIGEHSEEMLGCDKSMLEEQLPLLRAAIAECEKLQDYVSRDIL HHHHHHCCCCHHHHHHHHCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EDILEDEEEHLDWLESQFELIRLTGIQNYLQSQMDD HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: Fe [C]
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 1549605; 1904771 [H]