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The map label for this gene is adrA [H]

Identifier: 119775663

GI number: 119775663

Start: 3040686

End: 3041645

Strand: Reverse

Name: adrA [H]

Synonym: Sama_2531

Alternate gene names: 119775663

Gene position: 3041645-3040686 (Counterclockwise)

Preceding gene: 119775664

Following gene: 119775662

Centisome position: 70.64

GC content: 49.06

Gene sequence:

>960_bases
ATGAGTTCTGCACCCGAACACATACTGAATTCTGTTGCTTCTATTACCGAGCAGCGTCAGTTGCAGTCACTTGCCACCTG
TTTGATTGAAACCATTGAGCAAACCTTAGGGGTAAAGCAGGTTGCGGTTATCAATGTGGGTGATTTGCCTCATTTTCCAA
AATTCCTTACCTCAACCGATTTCGTGCTGGCACTGGATAATCCACCACCCTGCGTGCAGCGCTGCATCGATACCGGTAAG
AATGCGATTTGTGAGCAGGATGAGCGCTGCAAGGTCGCGCTGCCGGTCAAAATGAATGATGCCGTGGTTAAGGTACTTTT
GGTCTATGACCTCGACTTGAATAATGCCAACCTGATGATGCTGCAGGCATTCGCCCGTATTTACGAAAACTTTGCCCGGG
TTGTTCTCGACAGCCAGACCGATGGCTTAACCGGCCTGCTTAACCGCAAGGCCTACGATGCCCGCCTGTTTCATCTTTTC
AGCCACATTCGTACCGAAACCCGCAGGGCACCCTATTTTTGGATGCTGACGTTTGATATCGACTTCTTCAAGAAGATTAA
CGATACCCTGGGCCACCTATACGGGGACGAAGTCCTGCTTCGGATTAGCCGGGCAATGAATGACTGCTTCAGTGACGACG
ATGCGTTATTCCGCTTCGGGGGCGATGAATTTGTGGTGCTGCTGGACAACAAATCTCAGCATGAAGTCGAATGTATCTGT
CGTAAGCTGATGGCTGACGTCGGTAAAGTCCATCACGAAAAAACCGGACCTGTCACGCTTTCTATTGGGATAACGTCACT
GACCCTCGAAGATAACCCCATGTCTGTGATGATGAAAGCCGACAAAGCTCTCTACTTTGCCAAAGACAATGGTCGCAACA
GATGGGCCTTTTATCATGACCTCTTCCATCATGGTGATTTGCTGCCGACGCAAATTGATGACGATATAGAGCTGTTTTAG

Upstream 100 bases:

>100_bases
TTTATTGTTTTGTCACTTCTGTTTTATTTCCCCGAATAAACACCTATGCTGGCTATACTGGCATGGGTCGGTCATTCAGC
ACCAAGCGGGGGAAAGTGTC

Downstream 100 bases:

>100_bases
TCCCTCCCCGTTGATAAGCATAAACGCAATAAGAATAATTAGCCTTTAGATGTTATTGATATTAAAGGAAAAGTTGATTA
TTCGGTCCGACTGTACTAGG

Product: GGDEF domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 319; Mature: 318

Protein sequence:

>319_residues
MSSAPEHILNSVASITEQRQLQSLATCLIETIEQTLGVKQVAVINVGDLPHFPKFLTSTDFVLALDNPPPCVQRCIDTGK
NAICEQDERCKVALPVKMNDAVVKVLLVYDLDLNNANLMMLQAFARIYENFARVVLDSQTDGLTGLLNRKAYDARLFHLF
SHIRTETRRAPYFWMLTFDIDFFKKINDTLGHLYGDEVLLRISRAMNDCFSDDDALFRFGGDEFVVLLDNKSQHEVECIC
RKLMADVGKVHHEKTGPVTLSIGITSLTLEDNPMSVMMKADKALYFAKDNGRNRWAFYHDLFHHGDLLPTQIDDDIELF

Sequences:

>Translated_319_residues
MSSAPEHILNSVASITEQRQLQSLATCLIETIEQTLGVKQVAVINVGDLPHFPKFLTSTDFVLALDNPPPCVQRCIDTGK
NAICEQDERCKVALPVKMNDAVVKVLLVYDLDLNNANLMMLQAFARIYENFARVVLDSQTDGLTGLLNRKAYDARLFHLF
SHIRTETRRAPYFWMLTFDIDFFKKINDTLGHLYGDEVLLRISRAMNDCFSDDDALFRFGGDEFVVLLDNKSQHEVECIC
RKLMADVGKVHHEKTGPVTLSIGITSLTLEDNPMSVMMKADKALYFAKDNGRNRWAFYHDLFHHGDLLPTQIDDDIELF
>Mature_318_residues
SSAPEHILNSVASITEQRQLQSLATCLIETIEQTLGVKQVAVINVGDLPHFPKFLTSTDFVLALDNPPPCVQRCIDTGKN
AICEQDERCKVALPVKMNDAVVKVLLVYDLDLNNANLMMLQAFARIYENFARVVLDSQTDGLTGLLNRKAYDARLFHLFS
HIRTETRRAPYFWMLTFDIDFFKKINDTLGHLYGDEVLLRISRAMNDCFSDDDALFRFGGDEFVVLLDNKSQHEVECICR
KLMADVGKVHHEKTGPVTLSIGITSLTLEDNPMSVMMKADKALYFAKDNGRNRWAFYHDLFHHGDLLPTQIDDDIELF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GGDEF domain [H]

Homologues:

Organism=Escherichia coli, GI1786584, Length=176, Percent_Identity=33.5227272727273, Blast_Score=94, Evalue=2e-20,
Organism=Escherichia coli, GI145693134, Length=158, Percent_Identity=34.8101265822785, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI87081881, Length=160, Percent_Identity=35, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1787541, Length=172, Percent_Identity=32.5581395348837, Blast_Score=86, Evalue=4e-18,
Organism=Escherichia coli, GI1787262, Length=163, Percent_Identity=31.2883435582822, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1787816, Length=173, Percent_Identity=30.635838150289, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI1787056, Length=160, Percent_Identity=31.875, Blast_Score=78, Evalue=1e-15,
Organism=Escherichia coli, GI1788381, Length=192, Percent_Identity=30.2083333333333, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1787802, Length=186, Percent_Identity=29.5698924731183, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1788956, Length=185, Percent_Identity=32.4324324324324, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI87081977, Length=185, Percent_Identity=30.2702702702703, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI87081974, Length=177, Percent_Identity=25.9887005649718, Blast_Score=68, Evalue=8e-13,
Organism=Escherichia coli, GI87082007, Length=165, Percent_Identity=30.9090909090909, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR007894 [H]

Pfam domain/function: PF00990 GGDEF; PF05230 MASE2 [H]

EC number: NA

Molecular weight: Translated: 36236; Mature: 36105

Theoretical pI: Translated: 5.20; Mature: 5.20

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSAPEHILNSVASITEQRQLQSLATCLIETIEQTLGVKQVAVINVGDLPHFPKFLTSTD
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHCCCC
FVLALDNPPPCVQRCIDTGKNAICEQDERCKVALPVKMNDAVVKVLLVYDLDLNNANLMM
EEEEECCCCHHHHHHHHCCCCCCCCCCCCCEEEEEEECCHHHEEEEEEEEECCCCCCHHH
LQAFARIYENFARVVLDSQTDGLTGLLNRKAYDARLFHLFSHIRTETRRAPYFWMLTFDI
HHHHHHHHHHHHHHHCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECH
DFFKKINDTLGHLYGDEVLLRISRAMNDCFSDDDALFRFGGDEFVVLLDNKSQHEVECIC
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCEEEEEECCCCCHHHHHHH
RKLMADVGKVHHEKTGPVTLSIGITSLTLEDNPMSVMMKADKALYFAKDNGRNRWAFYHD
HHHHHHHHHHCCCCCCCEEEEEEEEEEEECCCCCEEEEECCCEEEEEECCCCCCCHHHHH
LFHHGDLLPTQIDDDIELF
HHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SSAPEHILNSVASITEQRQLQSLATCLIETIEQTLGVKQVAVINVGDLPHFPKFLTSTD
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHCCCC
FVLALDNPPPCVQRCIDTGKNAICEQDERCKVALPVKMNDAVVKVLLVYDLDLNNANLMM
EEEEECCCCHHHHHHHHCCCCCCCCCCCCCEEEEEEECCHHHEEEEEEEEECCCCCCHHH
LQAFARIYENFARVVLDSQTDGLTGLLNRKAYDARLFHLFSHIRTETRRAPYFWMLTFDI
HHHHHHHHHHHHHHHCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECH
DFFKKINDTLGHLYGDEVLLRISRAMNDCFSDDDALFRFGGDEFVVLLDNKSQHEVECIC
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCEEEEEECCCCCHHHHHHH
RKLMADVGKVHHEKTGPVTLSIGITSLTLEDNPMSVMMKADKALYFAKDNGRNRWAFYHD
HHHHHHHHHHCCCCCCCEEEEEEEEEEEECCCCCEEEEECCCEEEEEECCCCCCCHHHHH
LFHHGDLLPTQIDDDIELF
HHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]