Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

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The map label for this gene is 119775644

Identifier: 119775644

GI number: 119775644

Start: 3018164

End: 3019075

Strand: Direct

Name: 119775644

Synonym: Sama_2512

Alternate gene names: NA

Gene position: 3018164-3019075 (Clockwise)

Preceding gene: 119775641

Following gene: 119775646

Centisome position: 70.09

GC content: 53.51

Gene sequence:

>912_bases
TTGAAAACCTCAAATTTGGCCTATCTCTACGGGATGGCCGCGGTGCTTTTGTGGTCTACCGTTGCAACCGCCTTTAAGCT
GGCGCTGGCGGAGTATTCGCCTTTGCAATTGCTGTTCATCGCGGTGATTACTTCAATTCTGGCCCTGAGTGTCATTCTCG
GGTTTCAGGGTAAACTGAGGCAGGTCGCCCGTCAGTGGCAGGAAAGACCCCTGTTCTATCTGCAAACGGGGCTACTCAAC
CCATTCCTCTATTATCTGGTGCTCTTTAAAGCATACGATCTTCTGCCAGCGCAGCAGGCGCTGTCACTGAACTATACCTG
GGCGATTCTATTGCCGTTGCTGGCCGTGCCTCTGCTTGGTCAACAGCTGCGTAAAACCGATTTGCTGGCGGCCCTGATAG
CCTACGGTGGCGTATTTGTGATTGCGACCGGCGGCAGTTTGGCCGGGTTTTCCCTGTCTGAACCAACTGGCATTGTCATG
GCACTCACCAGCACCCTGCTTTGGTGCCTTTATTGGATAGTGAACACCAAAGATAAGGGCGACCCAGTGGTGAGCCTGAT
GCTCAGCTTTTTGGTTGGCTTACCCTTTGTAACCGTGGCTATGCTGGTGACCCAAGGCCTGCCCACCTTTTCAGGCCAGG
GCCTTGCCGCCGCTGTGTACGTGGGTTTATTTGAGATGGGTGTAACCTTCGTGCTCTGGCTGATGGCGCTCAAAAGCAGC
GAGCGCACCGCCAATATCAGCACCCTGGTATTTCTCTCCCCCGTGCTGTCGATTGGCTTTATTGCATTGGTACTGGGTGA
AGACATCAGGCTTTCCACCTTTATCGGTCTTGGTCTTATCCTCAGTGCATTGGCCCTGCAACAGTGGCTGCCGCGCTGGT
TTGGTAATCAGACCGAAACCGTGAATTCATAA

Upstream 100 bases:

>100_bases
TTTTTACATAATCAGGGCTGCAAACACGTATAATGCATGCAATCGAAGCGTTGACCCGTTCGGGTTGACCGGTTTGTCTC
GAGTTACAGGAATCTGTTAG

Downstream 100 bases:

>100_bases
AAAAAGGCCCTGAACAGGGCCTTTTTTCTGCCTTGGCTTTAAAAGCGGCTCAAAGCTGCTCGATACCCACTTCGCCAACG
CCGACTTCAACCTTCAGCTT

Product: integral membrane domain-containing protein

Products: NA

Alternate protein names: Integral Membrane Domain-Containing Protein; Transporter Drug/Metabolite Exporter Family; DMT Family Permease; Drug/Metabolite Exporter Family Protein; DMT Superfamily Permease; Drug/Metabolite Transporter Superfamily Permease; Drug/Metabolite Transporter Permease; Permease DMT Superfamily; Permease Outative

Number of amino acids: Translated: 303; Mature: 303

Protein sequence:

>303_residues
MKTSNLAYLYGMAAVLLWSTVATAFKLALAEYSPLQLLFIAVITSILALSVILGFQGKLRQVARQWQERPLFYLQTGLLN
PFLYYLVLFKAYDLLPAQQALSLNYTWAILLPLLAVPLLGQQLRKTDLLAALIAYGGVFVIATGGSLAGFSLSEPTGIVM
ALTSTLLWCLYWIVNTKDKGDPVVSLMLSFLVGLPFVTVAMLVTQGLPTFSGQGLAAAVYVGLFEMGVTFVLWLMALKSS
ERTANISTLVFLSPVLSIGFIALVLGEDIRLSTFIGLGLILSALALQQWLPRWFGNQTETVNS

Sequences:

>Translated_303_residues
MKTSNLAYLYGMAAVLLWSTVATAFKLALAEYSPLQLLFIAVITSILALSVILGFQGKLRQVARQWQERPLFYLQTGLLN
PFLYYLVLFKAYDLLPAQQALSLNYTWAILLPLLAVPLLGQQLRKTDLLAALIAYGGVFVIATGGSLAGFSLSEPTGIVM
ALTSTLLWCLYWIVNTKDKGDPVVSLMLSFLVGLPFVTVAMLVTQGLPTFSGQGLAAAVYVGLFEMGVTFVLWLMALKSS
ERTANISTLVFLSPVLSIGFIALVLGEDIRLSTFIGLGLILSALALQQWLPRWFGNQTETVNS
>Mature_303_residues
MKTSNLAYLYGMAAVLLWSTVATAFKLALAEYSPLQLLFIAVITSILALSVILGFQGKLRQVARQWQERPLFYLQTGLLN
PFLYYLVLFKAYDLLPAQQALSLNYTWAILLPLLAVPLLGQQLRKTDLLAALIAYGGVFVIATGGSLAGFSLSEPTGIVM
ALTSTLLWCLYWIVNTKDKGDPVVSLMLSFLVGLPFVTVAMLVTQGLPTFSGQGLAAAVYVGLFEMGVTFVLWLMALKSS
ERTANISTLVFLSPVLSIGFIALVLGEDIRLSTFIGLGLILSALALQQWLPRWFGNQTETVNS

Specific function: Unknown

COG id: COG0697

COG function: function code GER; Permeases of the drug/metabolite transporter (DMT) superfamily

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 33012; Mature: 33012

Theoretical pI: Translated: 9.18; Mature: 9.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTSNLAYLYGMAAVLLWSTVATAFKLALAEYSPLQLLFIAVITSILALSVILGFQGKLR
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCHHHH
QVARQWQERPLFYLQTGLLNPFLYYLVLFKAYDLLPAQQALSLNYTWAILLPLLAVPLLG
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHHHHHHH
QQLRKTDLLAALIAYGGVFVIATGGSLAGFSLSEPTGIVMALTSTLLWCLYWIVNTKDKG
HHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC
DPVVSLMLSFLVGLPFVTVAMLVTQGLPTFSGQGLAAAVYVGLFEMGVTFVLWLMALKSS
CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
ERTANISTLVFLSPVLSIGFIALVLGEDIRLSTFIGLGLILSALALQQWLPRWFGNQTET
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
VNS
CCC
>Mature Secondary Structure
MKTSNLAYLYGMAAVLLWSTVATAFKLALAEYSPLQLLFIAVITSILALSVILGFQGKLR
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCHHHH
QVARQWQERPLFYLQTGLLNPFLYYLVLFKAYDLLPAQQALSLNYTWAILLPLLAVPLLG
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHHHHHHH
QQLRKTDLLAALIAYGGVFVIATGGSLAGFSLSEPTGIVMALTSTLLWCLYWIVNTKDKG
HHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC
DPVVSLMLSFLVGLPFVTVAMLVTQGLPTFSGQGLAAAVYVGLFEMGVTFVLWLMALKSS
CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
ERTANISTLVFLSPVLSIGFIALVLGEDIRLSTFIGLGLILSALALQQWLPRWFGNQTET
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
VNS
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA