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The map label for this gene is hlyB [H]

Identifier: 119775634

GI number: 119775634

Start: 3003539

End: 3005488

Strand: Reverse

Name: hlyB [H]

Synonym: Sama_2502

Alternate gene names: 119775634

Gene position: 3005488-3003539 (Counterclockwise)

Preceding gene: 119775635

Following gene: 119775633

Centisome position: 69.8

GC content: 52.26

Gene sequence:

>1950_bases
ATGTTTTCCAGCCTCCGGCTATCTCAGCAGCTCTATTATTCCTTTGGTGTTGTGATTGTTCTCTTATTGGTTGTCACAGT
GGCCGGATATCGGGGATTGACTGAGGGTTTCAAAAACTTTACTGAATATCGGCTGCTGGCCAGTAGCTCAAATGCAGCCA
GCGAAGCTGAAGCCACCTTGCTCCGAGCTCAAGTTGACGTGTTCAGATACCTTAACACGCCCGATAACACGACTTACCAG
TCATTTCAGAAAAATATTGCTGAGCTTAATCAGGATATTAGCCATGCCAAGGAATTGGAGCTCGATGCCGGTCGAGATAG
TCTTCTGGCGCAGGCTGATGGGTTGGTAAAAAACTATGCATCCACCTTTGAGGCCATAACAGGTGATTTTGCGGCTCGCA
ACCAGGTGGTGCGGGATTTGCTGGACCCAGCCGGGCTGAGCATGCGCGAAAACGTAACCGATGTGATTACCGCCATGTAT
CAGGAAGGGGACGCTGACGGCTTGTTTGTTGCAGCAAGGAGCCAGGAAAAACTGATGCTTGCCCGGCTTTTTGCTTCCAA
CTTTCTGATCTCCAACAGAGAAGAGGACTATAAGCGGGCGTTGCAGGAACTCTCTGCCCTCGACGGCACCATTAATGGCC
TGAAAAGTGTTGAAAGTGCGACTGTCATTGCTGACAAGGTGGAAGGTATTGATACAGGACGGACTCAATATCGTGATGCG
CTCAAAGCGGTTTACGGCATTATTCAAAATCAGAACGGGCGCATCGATGAGGGGCTGAATGTTATAGGTCCCAAAGTGGC
AGCTGTACTCCAGGAATACAATAAAGCGATTGAGCAGCAGCAGGGTGAACTTGGGCTCTACGCCCAGCAGAAAAGTGAAA
ATGCCATCGATACGGTTGTGGTGGTCGCCATAGCAGCGATGCTGATGGCTATTTGGCTGGCCATTACTGTGGTGCGTGCT
ATTCGTCGGCCTGTGGGTGGCGAACCCAGAGAAATAGCATCCATTGCCCGTGAGATAGCCGGTGGAAACCTGGGGCAGAA
TTTCCTACGTGAGGGAAGTACAGGTATTTATGCGGCTATGGCGGAGATGAATGATAATCTGCGGCGTATCGTCAGCGAGC
TTAACGATGCGTCCCGTACCCTGGGTGATTCCTCCAGTGGCATGCTTGGGGTAACCGAAGAGAGCCGGAAGAACTCTGAA
TCCCAAGCCGATCAGTTGGCGCACACGGCTTCGGCCATGCAGGAGATGACCCATACTGTAGATGACATTGCCAGAAACGC
CCAGCGCGCGTCTGAAATGGCATCTGAGGCCGATCATCATGCCCAGGAAGGCATGGGCGTGGTGGAAGATACCCGCCGCA
GCATCATGGTGCTGGTGGACAATATCACCGATGTCAGCGGCATTATCGAGAACCTGGAGAAAGAAACCGAAAACGTCGGT
TCTATACTGGATGTTATCCGGGGTATTGCCGAGCAAACCAACCTGTTGGCGCTCAATGCAGCCATTGAGGCGGCCCGCGC
TGGCGAACAGGGACGCGGCTTTGCGGTGGTGGCCGATGAGGTGCGGAATCTTGCCAGTCGAACCCAAAACAGCACCGAAG
AAATTCAGGCCCTGATTGGCCGCTTGCAGGCCGAGTCCCGCCGTTCGGTTGAATCCATGCGGGTCAATGTAACGGAAGCC
ACTCAAACGTCAGAAAAGGCCAATAAGGCTATTGCTGCCCTCGGGGCGATTGCCGATTCAGTCATGGCAATTCGCGATAT
GAACCATCAGATTGCAGTGGCAGCAGAAGAGCAGGCAACCGTAGTGGGTACCATTAATGTGAGTGTGGAAGAAATAAGTG
GACTGGCTCGGATGAATGCCGCAGGCAGTGAACAGGTACAAAATTCGGCCAATGGGATCAGCGAAATATCCAGTAAACTC
AGTGGTATAGTCGGTCGATTCAAGCTCTGA

Upstream 100 bases:

>100_bases
GGCTTGGATGGTAAATTCTCTTTGTTGTTCAGTGCTTAACCAGTCCGGCTGTCAGGGAAAGATGTGCGGATTTTTATAAC
TCAAAAAATGGAGATCCCAT

Downstream 100 bases:

>100_bases
CTTCCCAAGCCCCGACATTGCATGGCTGGTCTGGCCTTTGCGGTATCGGGGCTTTTGTTATTGGCGTACTGAATTTGGCG
TGCTATCAAAACACTGTTAA

Product: putative methyl-accepting chemotaxis sensory transducer

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 649; Mature: 649

Protein sequence:

>649_residues
MFSSLRLSQQLYYSFGVVIVLLLVVTVAGYRGLTEGFKNFTEYRLLASSSNAASEAEATLLRAQVDVFRYLNTPDNTTYQ
SFQKNIAELNQDISHAKELELDAGRDSLLAQADGLVKNYASTFEAITGDFAARNQVVRDLLDPAGLSMRENVTDVITAMY
QEGDADGLFVAARSQEKLMLARLFASNFLISNREEDYKRALQELSALDGTINGLKSVESATVIADKVEGIDTGRTQYRDA
LKAVYGIIQNQNGRIDEGLNVIGPKVAAVLQEYNKAIEQQQGELGLYAQQKSENAIDTVVVVAIAAMLMAIWLAITVVRA
IRRPVGGEPREIASIAREIAGGNLGQNFLREGSTGIYAAMAEMNDNLRRIVSELNDASRTLGDSSSGMLGVTEESRKNSE
SQADQLAHTASAMQEMTHTVDDIARNAQRASEMASEADHHAQEGMGVVEDTRRSIMVLVDNITDVSGIIENLEKETENVG
SILDVIRGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRNLASRTQNSTEEIQALIGRLQAESRRSVESMRVNVTEA
TQTSEKANKAIAALGAIADSVMAIRDMNHQIAVAAEEQATVVGTINVSVEEISGLARMNAAGSEQVQNSANGISEISSKL
SGIVGRFKL

Sequences:

>Translated_649_residues
MFSSLRLSQQLYYSFGVVIVLLLVVTVAGYRGLTEGFKNFTEYRLLASSSNAASEAEATLLRAQVDVFRYLNTPDNTTYQ
SFQKNIAELNQDISHAKELELDAGRDSLLAQADGLVKNYASTFEAITGDFAARNQVVRDLLDPAGLSMRENVTDVITAMY
QEGDADGLFVAARSQEKLMLARLFASNFLISNREEDYKRALQELSALDGTINGLKSVESATVIADKVEGIDTGRTQYRDA
LKAVYGIIQNQNGRIDEGLNVIGPKVAAVLQEYNKAIEQQQGELGLYAQQKSENAIDTVVVVAIAAMLMAIWLAITVVRA
IRRPVGGEPREIASIAREIAGGNLGQNFLREGSTGIYAAMAEMNDNLRRIVSELNDASRTLGDSSSGMLGVTEESRKNSE
SQADQLAHTASAMQEMTHTVDDIARNAQRASEMASEADHHAQEGMGVVEDTRRSIMVLVDNITDVSGIIENLEKETENVG
SILDVIRGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRNLASRTQNSTEEIQALIGRLQAESRRSVESMRVNVTEA
TQTSEKANKAIAALGAIADSVMAIRDMNHQIAVAAEEQATVVGTINVSVEEISGLARMNAAGSEQVQNSANGISEISSKL
SGIVGRFKL
>Mature_649_residues
MFSSLRLSQQLYYSFGVVIVLLLVVTVAGYRGLTEGFKNFTEYRLLASSSNAASEAEATLLRAQVDVFRYLNTPDNTTYQ
SFQKNIAELNQDISHAKELELDAGRDSLLAQADGLVKNYASTFEAITGDFAARNQVVRDLLDPAGLSMRENVTDVITAMY
QEGDADGLFVAARSQEKLMLARLFASNFLISNREEDYKRALQELSALDGTINGLKSVESATVIADKVEGIDTGRTQYRDA
LKAVYGIIQNQNGRIDEGLNVIGPKVAAVLQEYNKAIEQQQGELGLYAQQKSENAIDTVVVVAIAAMLMAIWLAITVVRA
IRRPVGGEPREIASIAREIAGGNLGQNFLREGSTGIYAAMAEMNDNLRRIVSELNDASRTLGDSSSGMLGVTEESRKNSE
SQADQLAHTASAMQEMTHTVDDIARNAQRASEMASEADHHAQEGMGVVEDTRRSIMVLVDNITDVSGIIENLEKETENVG
SILDVIRGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRNLASRTQNSTEEIQALIGRLQAESRRSVESMRVNVTEA
TQTSEKANKAIAALGAIADSVMAIRDMNHQIAVAAEEQATVVGTINVSVEEISGLARMNAAGSEQVQNSANGISEISSKL
SGIVGRFKL

Specific function: May form a pore through which the hemolysin can be exported [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 methyl-accepting transducer domain [H]

Homologues:

Organism=Escherichia coli, GI1788194, Length=347, Percent_Identity=33.1412103746398, Blast_Score=139, Evalue=7e-34,
Organism=Escherichia coli, GI2367378, Length=330, Percent_Identity=34.5454545454545, Blast_Score=133, Evalue=4e-32,
Organism=Escherichia coli, GI1788195, Length=332, Percent_Identity=32.8313253012048, Blast_Score=131, Evalue=1e-31,
Organism=Escherichia coli, GI1787690, Length=352, Percent_Identity=29.8295454545455, Blast_Score=118, Evalue=1e-27,
Organism=Escherichia coli, GI1789453, Length=336, Percent_Identity=27.9761904761905, Blast_Score=93, Evalue=5e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004090
- InterPro:   IPR004089
- InterPro:   IPR003660
- InterPro:   IPR000727 [H]

Pfam domain/function: PF00672 HAMP; PF00015 MCPsignal [H]

EC number: NA

Molecular weight: Translated: 70064; Mature: 70064

Theoretical pI: Translated: 4.51; Mature: 4.51

Prosite motif: PS50111 CHEMOTAXIS_TRANSDUC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFSSLRLSQQLYYSFGVVIVLLLVVTVAGYRGLTEGFKNFTEYRLLASSSNAASEAEATL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
LRAQVDVFRYLNTPDNTTYQSFQKNIAELNQDISHAKELELDAGRDSLLAQADGLVKNYA
HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
STFEAITGDFAARNQVVRDLLDPAGLSMRENVTDVITAMYQEGDADGLFVAARSQEKLML
HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHH
ARLFASNFLISNREEDYKRALQELSALDGTINGLKSVESATVIADKVEGIDTGRTQYRDA
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
LKAVYGIIQNQNGRIDEGLNVIGPKVAAVLQEYNKAIEQQQGELGLYAQQKSENAIDTVV
HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCHHHHHH
VVAIAAMLMAIWLAITVVRAIRRPVGGEPREIASIAREIAGGNLGQNFLREGSTGIYAAM
HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHH
AEMNDNLRRIVSELNDASRTLGDSSSGMLGVTEESRKNSESQADQLAHTASAMQEMTHTV
HHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCHHHHCCCHHHHHHHHHHHHHHHHHHHHH
DDIARNAQRASEMASEADHHAQEGMGVVEDTRRSIMVLVDNITDVSGIIENLEKETENVG
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SILDVIRGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRNLASRTQNSTEEIQALIG
HHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHCCCCHHHHHHHHH
RLQAESRRSVESMRVNVTEATQTSEKANKAIAALGAIADSVMAIRDMNHQIAVAAEEQAT
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCEE
VVGTINVSVEEISGLARMNAAGSEQVQNSANGISEISSKLSGIVGRFKL
EEEEEECCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MFSSLRLSQQLYYSFGVVIVLLLVVTVAGYRGLTEGFKNFTEYRLLASSSNAASEAEATL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
LRAQVDVFRYLNTPDNTTYQSFQKNIAELNQDISHAKELELDAGRDSLLAQADGLVKNYA
HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
STFEAITGDFAARNQVVRDLLDPAGLSMRENVTDVITAMYQEGDADGLFVAARSQEKLML
HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHH
ARLFASNFLISNREEDYKRALQELSALDGTINGLKSVESATVIADKVEGIDTGRTQYRDA
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
LKAVYGIIQNQNGRIDEGLNVIGPKVAAVLQEYNKAIEQQQGELGLYAQQKSENAIDTVV
HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCHHHHHH
VVAIAAMLMAIWLAITVVRAIRRPVGGEPREIASIAREIAGGNLGQNFLREGSTGIYAAM
HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHH
AEMNDNLRRIVSELNDASRTLGDSSSGMLGVTEESRKNSESQADQLAHTASAMQEMTHTV
HHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCHHHHCCCHHHHHHHHHHHHHHHHHHHHH
DDIARNAQRASEMASEADHHAQEGMGVVEDTRRSIMVLVDNITDVSGIIENLEKETENVG
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SILDVIRGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRNLASRTQNSTEEIQALIG
HHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHCCCCHHHHHHHHH
RLQAESRRSVESMRVNVTEATQTSEKANKAIAALGAIADSVMAIRDMNHQIAVAAEEQAT
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCEE
VVGTINVSVEEISGLARMNAAGSEQVQNSANGISEISSKLSGIVGRFKL
EEEEEECCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 2162464; 10952301 [H]