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The map label for this gene is yafC [H]

Identifier: 119775618

GI number: 119775618

Start: 2987708

End: 2988649

Strand: Reverse

Name: yafC [H]

Synonym: Sama_2485

Alternate gene names: 119775618

Gene position: 2988649-2987708 (Counterclockwise)

Preceding gene: 119775619

Following gene: 119775609

Centisome position: 69.4

GC content: 52.02

Gene sequence:

>942_bases
ATGTTAGAACTGTTAGAACCCATTGCTATTTTTACCCATGTAGCCAGAGCCGGCAGTTTCAGCGCCGCGGCAAGAAAACT
CGGGATTTCCAAATCCAAGGTGAGTACCCAGGTGGCCGATTTGGAACATAAACTGGGGGTTCAGCTTATTCAGCGTACTA
CCCGCAGTTTGAGCCTGACCGAGGCCGGACATCTGCTGTATGTACAGGGTGAAGAGTTGCTGCGCGATGCCGATCAGGCA
GTCGCCAGCGTTCATAACCTCAATGATGCTACCCGTGGGGTCTTGAAAGTCGGTATCTCCCAATCCTTCGGTACCATGCA
CATTATTCCGGCCTTGCCTGAGTTTATGGCAAGACACCCAGAGCTTGAGCTGCAGGTGAGTCTGCTGGACCACAAAGTGG
ATGTGGTTAGCGAAGGCCTGGATCTGTTGCTGACCATGTCTGAGCAATTGCCTCTTGGTATGGTTGCCAGACCTTTAATG
AAGTGTCAGTTCCTGCTGGTGGCCTCTCCCGAGTACATTGCCCGCCATGGTGAGCCAAGCCGCCCCGAGCAGTTGGTTGA
TCATAATTGTCTCGTGTATCACGGTGAGTGGCATGAACACAGTGTATGGCAATTCAAACGTGGCGATGATTACTGTGAAA
TAGGCGTTTCGGGTAATTTCCGGGTAGACAATGCACCGGCGCTCAAGTCGGCAGCTGTCAGCGGGCTCGGCGTTGTGTAT
CTCGCCAGTTATCTGATGGAAGATGAAATCAACAAGGGCACCCTGGTGCCTCTGCTGCGTGATTGGCAGCTGACCCATCA
CCTGCCATTGCAGGCAGTTTATCCCCGCCGTAAACATCTGGCACCCAAGGTAAGTTCATTCATCGACTTCATAAAAAATC
ACATAGGTACACCGCCATACTGGGATGCGCCTTATCAGTCACTGTATGACGAACGGCGATAA

Upstream 100 bases:

>100_bases
CCCTAACGTGCTTTTTTGGTATATCTGATTGATTATCATTGGTTTGTCCCGTTTTCCTCCCTTGGCGAGGACAGGCTGAA
CTTAGCTTAAGGCCACCTTC

Downstream 100 bases:

>100_bases
TTTTAAAATTCATTGTTCGCAATAATAGATAATAGTGTGACCTCGGTATTTTATTGTGAATTATTTGGTTAATAATCAAT
AATTTGAGTATTCCCTAAAG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 313; Mature: 313

Protein sequence:

>313_residues
MLELLEPIAIFTHVARAGSFSAAARKLGISKSKVSTQVADLEHKLGVQLIQRTTRSLSLTEAGHLLYVQGEELLRDADQA
VASVHNLNDATRGVLKVGISQSFGTMHIIPALPEFMARHPELELQVSLLDHKVDVVSEGLDLLLTMSEQLPLGMVARPLM
KCQFLLVASPEYIARHGEPSRPEQLVDHNCLVYHGEWHEHSVWQFKRGDDYCEIGVSGNFRVDNAPALKSAAVSGLGVVY
LASYLMEDEINKGTLVPLLRDWQLTHHLPLQAVYPRRKHLAPKVSSFIDFIKNHIGTPPYWDAPYQSLYDERR

Sequences:

>Translated_313_residues
MLELLEPIAIFTHVARAGSFSAAARKLGISKSKVSTQVADLEHKLGVQLIQRTTRSLSLTEAGHLLYVQGEELLRDADQA
VASVHNLNDATRGVLKVGISQSFGTMHIIPALPEFMARHPELELQVSLLDHKVDVVSEGLDLLLTMSEQLPLGMVARPLM
KCQFLLVASPEYIARHGEPSRPEQLVDHNCLVYHGEWHEHSVWQFKRGDDYCEIGVSGNFRVDNAPALKSAAVSGLGVVY
LASYLMEDEINKGTLVPLLRDWQLTHHLPLQAVYPRRKHLAPKVSSFIDFIKNHIGTPPYWDAPYQSLYDERR
>Mature_313_residues
MLELLEPIAIFTHVARAGSFSAAARKLGISKSKVSTQVADLEHKLGVQLIQRTTRSLSLTEAGHLLYVQGEELLRDADQA
VASVHNLNDATRGVLKVGISQSFGTMHIIPALPEFMARHPELELQVSLLDHKVDVVSEGLDLLLTMSEQLPLGMVARPLM
KCQFLLVASPEYIARHGEPSRPEQLVDHNCLVYHGEWHEHSVWQFKRGDDYCEIGVSGNFRVDNAPALKSAAVSGLGVVY
LASYLMEDEINKGTLVPLLRDWQLTHHLPLQAVYPRRKHLAPKVSSFIDFIKNHIGTPPYWDAPYQSLYDERR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786401, Length=297, Percent_Identity=31.986531986532, Blast_Score=163, Evalue=1e-41,
Organism=Escherichia coli, GI1787128, Length=297, Percent_Identity=31.986531986532, Blast_Score=150, Evalue=1e-37,
Organism=Escherichia coli, GI1789440, Length=309, Percent_Identity=27.1844660194175, Blast_Score=146, Evalue=2e-36,
Organism=Escherichia coli, GI87081978, Length=295, Percent_Identity=30.5084745762712, Blast_Score=140, Evalue=1e-34,
Organism=Escherichia coli, GI145693193, Length=291, Percent_Identity=28.1786941580756, Blast_Score=134, Evalue=8e-33,
Organism=Escherichia coli, GI1787589, Length=286, Percent_Identity=31.4685314685315, Blast_Score=130, Evalue=1e-31,
Organism=Escherichia coli, GI1789639, Length=304, Percent_Identity=26.9736842105263, Blast_Score=117, Evalue=1e-27,
Organism=Escherichia coli, GI1786448, Length=289, Percent_Identity=26.9896193771626, Blast_Score=92, Evalue=6e-20,
Organism=Escherichia coli, GI1788706, Length=306, Percent_Identity=26.1437908496732, Blast_Score=88, Evalue=8e-19,
Organism=Escherichia coli, GI1789173, Length=260, Percent_Identity=26.1538461538462, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1790011, Length=301, Percent_Identity=24.9169435215947, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1788481, Length=310, Percent_Identity=27.0967741935484, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI157672245, Length=119, Percent_Identity=34.453781512605, Blast_Score=78, Evalue=7e-16,
Organism=Escherichia coli, GI1788297, Length=303, Percent_Identity=24.7524752475248, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1790262, Length=246, Percent_Identity=26.4227642276423, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI145693105, Length=194, Percent_Identity=25.2577319587629, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1789506, Length=169, Percent_Identity=27.2189349112426, Blast_Score=64, Evalue=9e-12,
Organism=Escherichia coli, GI1788748, Length=121, Percent_Identity=33.8842975206612, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1790783, Length=293, Percent_Identity=23.8907849829352, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI2367136, Length=171, Percent_Identity=27.4853801169591, Blast_Score=62, Evalue=6e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 35021; Mature: 35021

Theoretical pI: Translated: 6.72; Mature: 6.72

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLELLEPIAIFTHVARAGSFSAAARKLGISKSKVSTQVADLEHKLGVQLIQRTTRSLSLT
CCHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCEEE
EAGHLLYVQGEELLRDADQAVASVHNLNDATRGVLKVGISQSFGTMHIIPALPEFMARHP
CCCCEEEEECHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCEEEHHHHHHHHHCCC
ELELQVSLLDHKVDVVSEGLDLLLTMSEQLPLGMVARPLMKCQFLLVASPEYIARHGEPS
CCEEEEHHHHHHHHHHHCCHHEEEECCCCCCHHHHHHHHHHHEEEEEECHHHHHHCCCCC
RPEQLVDHNCLVYHGEWHEHSVWQFKRGDDYCEIGVSGNFRVDNAPALKSAAVSGLGVVY
CCHHHHCCCEEEEECCCCCCCCEEECCCCCEEEECCCCCEEECCCCHHHHHHHHHHHHHH
LASYLMEDEINKGTLVPLLRDWQLTHHLPLQAVYPRRKHLAPKVSSFIDFIKNHIGTPPY
HHHHHHHHCCCCCCCCHHHHCCCHHHCCCCHHCCCHHHHCCHHHHHHHHHHHHHCCCCCC
WDAPYQSLYDERR
CCCHHHHHHHCCC
>Mature Secondary Structure
MLELLEPIAIFTHVARAGSFSAAARKLGISKSKVSTQVADLEHKLGVQLIQRTTRSLSLT
CCHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCEEE
EAGHLLYVQGEELLRDADQAVASVHNLNDATRGVLKVGISQSFGTMHIIPALPEFMARHP
CCCCEEEEECHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCEEEHHHHHHHHHCCC
ELELQVSLLDHKVDVVSEGLDLLLTMSEQLPLGMVARPLMKCQFLLVASPEYIARHGEPS
CCEEEEHHHHHHHHHHHCCHHEEEECCCCCCHHHHHHHHHHHEEEEEECHHHHHHCCCCC
RPEQLVDHNCLVYHGEWHEHSVWQFKRGDDYCEIGVSGNFRVDNAPALKSAAVSGLGVVY
CCHHHHCCCEEEEECCCCCCCCEEECCCCCEEEECCCCCEEECCCCHHHHHHHHHHHHHH
LASYLMEDEINKGTLVPLLRDWQLTHHLPLQAVYPRRKHLAPKVSSFIDFIKNHIGTPPY
HHHHHHHHCCCCCCCCHHHHCCCHHHCCCCHHCCCHHHHCCHHHHHHHHHHHHHCCCCCC
WDAPYQSLYDERR
CCCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]