Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

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The map label for this gene is 119775619

Identifier: 119775619

GI number: 119775619

Start: 2988972

End: 2989784

Strand: Reverse

Name: 119775619

Synonym: Sama_2486

Alternate gene names: NA

Gene position: 2989784-2988972 (Counterclockwise)

Preceding gene: 119775620

Following gene: 119775618

Centisome position: 69.43

GC content: 51.91

Gene sequence:

>813_bases
ATGAAAACCAAAAACCTTATCACCGGTGTAGCCCTGGCCACTCTGATTGGCGTGACTGTAGCTGTTCCTGCGAAAGCGCA
GGGGATCAGTACCGACAACTGTGACGTTAACCTCAACTACGACATTTCTGTCGAGCCGAAAAAGCTGGTGCTGAGCCAGA
AGGGTGATGAGTTTTATCGCTTCGAGCCGGGCAAACTCTTTGTGGACGGAAAGGAAGTCAAGCTCAATGCCGAGCAGCGT
GCCCTTGTGGACAACTATGCCGACTCACTGGCAAACCAGGTGCCTGAATTTGTAGCCTTGGTAACCGATGCCATCACCCT
CGCCAGCACAGCAGTAAATACAGCCCTCACTCCGCTGCTGGGCGATGAGACCAGCGCCCGCGTGGCAGAGCTGATGGACA
ATGTGAATGAGCGACTCGGTGAAGTCATGCACAAAGATGGCGACAGCTACTACGTGGGCGTGACCGACGGCTCTATCGAT
GAAGTGTTCGACAAGGAGTTCGAGCGTGAAATTGAAAATCTGGTGCAGGACTCTGTTGGCACTCTGATGATTAAACTCGG
TACCGAAATCCTGTCGTCCGAAGGTGATAGCTTTGAAGCCAAGATGGATGCCTTTGGCAAGAAAATGGAAGCCATGGGCG
AACAGATTGAGCGTGAAATGGAAAGTCAGTCAAAGACCCTTGAAGCGCGCGCCACCAAAGTATGTGACCAGTTTGAAACC
TTACTGGCACTGGAGTCTGAACTTCGCACCAAGGTGCCTGCACTGTCAGAACTTGAGATTTCTGACCGTAAAGAAGCTCA
GCTTCGCGAGTAA

Upstream 100 bases:

>100_bases
CAGTAATGGATGTTATGTTGTTTTAAATTAATGACTTAATAAAGTTGGCACATCCTTCGCTATATCAAAAAATATAAATC
AAGACGCAAGGATAGATGCG

Downstream 100 bases:

>100_bases
GTTACACCCGGGCTTGCCCTTGACTCTCTCAAGGTAACCCATGCGATACCCAATTTGACATCCCTTTGGTTCTTCCTTGA
ACGTTTGGCCCCATCCCTGG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 270; Mature: 270

Protein sequence:

>270_residues
MKTKNLITGVALATLIGVTVAVPAKAQGISTDNCDVNLNYDISVEPKKLVLSQKGDEFYRFEPGKLFVDGKEVKLNAEQR
ALVDNYADSLANQVPEFVALVTDAITLASTAVNTALTPLLGDETSARVAELMDNVNERLGEVMHKDGDSYYVGVTDGSID
EVFDKEFEREIENLVQDSVGTLMIKLGTEILSSEGDSFEAKMDAFGKKMEAMGEQIEREMESQSKTLEARATKVCDQFET
LLALESELRTKVPALSELEISDRKEAQLRE

Sequences:

>Translated_270_residues
MKTKNLITGVALATLIGVTVAVPAKAQGISTDNCDVNLNYDISVEPKKLVLSQKGDEFYRFEPGKLFVDGKEVKLNAEQR
ALVDNYADSLANQVPEFVALVTDAITLASTAVNTALTPLLGDETSARVAELMDNVNERLGEVMHKDGDSYYVGVTDGSID
EVFDKEFEREIENLVQDSVGTLMIKLGTEILSSEGDSFEAKMDAFGKKMEAMGEQIEREMESQSKTLEARATKVCDQFET
LLALESELRTKVPALSELEISDRKEAQLRE
>Mature_270_residues
MKTKNLITGVALATLIGVTVAVPAKAQGISTDNCDVNLNYDISVEPKKLVLSQKGDEFYRFEPGKLFVDGKEVKLNAEQR
ALVDNYADSLANQVPEFVALVTDAITLASTAVNTALTPLLGDETSARVAELMDNVNERLGEVMHKDGDSYYVGVTDGSID
EVFDKEFEREIENLVQDSVGTLMIKLGTEILSSEGDSFEAKMDAFGKKMEAMGEQIEREMESQSKTLEARATKVCDQFET
LLALESELRTKVPALSELEISDRKEAQLRE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 29669; Mature: 29669

Theoretical pI: Translated: 4.19; Mature: 4.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTKNLITGVALATLIGVTVAVPAKAQGISTDNCDVNLNYDISVEPKKLVLSQKGDEFYR
CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECEEECCCHHHHHHHCCCCCCEE
FEPGKLFVDGKEVKLNAEQRALVDNYADSLANQVPEFVALVTDAITLASTAVNTALTPLL
ECCCEEEECCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GDETSARVAELMDNVNERLGEVMHKDGDSYYVGVTDGSIDEVFDKEFEREIENLVQDSVG
CCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHH
TLMIKLGTEILSSEGDSFEAKMDAFGKKMEAMGEQIEREMESQSKTLEARATKVCDQFET
HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLALESELRTKVPALSELEISDRKEAQLRE
HHHHHHHHHHHCCCCCCCCCCCCCHHHCCC
>Mature Secondary Structure
MKTKNLITGVALATLIGVTVAVPAKAQGISTDNCDVNLNYDISVEPKKLVLSQKGDEFYR
CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECEEECCCHHHHHHHCCCCCCEE
FEPGKLFVDGKEVKLNAEQRALVDNYADSLANQVPEFVALVTDAITLASTAVNTALTPLL
ECCCEEEECCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GDETSARVAELMDNVNERLGEVMHKDGDSYYVGVTDGSIDEVFDKEFEREIENLVQDSVG
CCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHH
TLMIKLGTEILSSEGDSFEAKMDAFGKKMEAMGEQIEREMESQSKTLEARATKVCDQFET
HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLALESELRTKVPALSELEISDRKEAQLRE
HHHHHHHHHHHCCCCCCCCCCCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA