| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119775602
Identifier: 119775602
GI number: 119775602
Start: 2974744
End: 2975304
Strand: Reverse
Name: 119775602
Synonym: Sama_2469
Alternate gene names: NA
Gene position: 2975304-2974744 (Counterclockwise)
Preceding gene: 119775607
Following gene: 119775601
Centisome position: 69.09
GC content: 50.27
Gene sequence:
>561_bases ATGAAAAAGATTATAGTTGTGGCCGCCTTGCTGGCTCTCAGTGCCTGTTCCAGTATGAAAACCAGCTGGGACTTCGATCC CGGAGTGACTTTTAACCAATACAAAACCTATGCCTGGGTAGAAAAGAAGGACGATGACGCGGGTTATCACCTCGATGGCC TGATGGATCAAAGGGTGCGTGACGCCATCGAGACTGAACTTGCCCAGAAGGGATTCAGTAAGTCAGAGGCGGCCGGTGCC GATCTCTTGGTGAACTACCTCACCAAGGTTGATAAGAAAATCAATGTTGATACCTTCAACACCAGCTATGGCTATAACCC GTATTGGGGACCGGGTTGGGGCTGGGGTGGTAACGTGCAGACCCAAACCACGGTGCGCGAGTATGAGGTTGGTACACTTA TCATTGATCTAATTGATAATAAATCAGGTAAGCTGGTATGGCGTGGCTCAGTGGCCGACACCATACGCGACAGCAATACG CCACAGGAACGTGAAACCAAGGTGCGTGAAGCCGTGGCCGGTGTGATGCTGAATTATCCACCAAAGTCTGATACCAAGTA A
Upstream 100 bases:
>100_bases GTAATTTCAGTTGTTAGTCACAAAAAGCACAGTTAAGCTGAACCAAATTGCCTCTTATCTGTCTGAAAGGGCAGAAGACT TTGCTTCGGAGAGACCCTTT
Downstream 100 bases:
>100_bases GGCTAAGAGTAATAAAAAAGCGACCTCGGGTCGCTTTTTTATTGCCTCTTTCTTCTGCATTTTTTATCGCAATCCCCGAA CCCCAGGCCCCTTATCAGAG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 186; Mature: 186
Protein sequence:
>186_residues MKKIIVVAALLALSACSSMKTSWDFDPGVTFNQYKTYAWVEKKDDDAGYHLDGLMDQRVRDAIETELAQKGFSKSEAAGA DLLVNYLTKVDKKINVDTFNTSYGYNPYWGPGWGWGGNVQTQTTVREYEVGTLIIDLIDNKSGKLVWRGSVADTIRDSNT PQERETKVREAVAGVMLNYPPKSDTK
Sequences:
>Translated_186_residues MKKIIVVAALLALSACSSMKTSWDFDPGVTFNQYKTYAWVEKKDDDAGYHLDGLMDQRVRDAIETELAQKGFSKSEAAGA DLLVNYLTKVDKKINVDTFNTSYGYNPYWGPGWGWGGNVQTQTTVREYEVGTLIIDLIDNKSGKLVWRGSVADTIRDSNT PQERETKVREAVAGVMLNYPPKSDTK >Mature_186_residues MKKIIVVAALLALSACSSMKTSWDFDPGVTFNQYKTYAWVEKKDDDAGYHLDGLMDQRVRDAIETELAQKGFSKSEAAGA DLLVNYLTKVDKKINVDTFNTSYGYNPYWGPGWGWGGNVQTQTTVREYEVGTLIIDLIDNKSGKLVWRGSVADTIRDSNT PQERETKVREAVAGVMLNYPPKSDTK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20772; Mature: 20772
Theoretical pI: Translated: 5.34; Mature: 5.34
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKIIVVAALLALSACSSMKTSWDFDPGVTFNQYKTYAWVEKKDDDAGYHLDGLMDQRVR CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEECCCCCCCEEHHHHHHHHHH DAIETELAQKGFSKSEAAGADLLVNYLTKVDKKINVDTFNTSYGYNPYWGPGWGWGGNVQ HHHHHHHHHCCCCCCHHCHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCCCCCCCCCC TQTTVREYEVGTLIIDLIDNKSGKLVWRGSVADTIRDSNTPQERETKVREAVAGVMLNYP CCHHHHHEECCEEEEEEECCCCCCEEECCCHHHHHCCCCCCHHHHHHHHHHHHHHHEECC PKSDTK CCCCCC >Mature Secondary Structure MKKIIVVAALLALSACSSMKTSWDFDPGVTFNQYKTYAWVEKKDDDAGYHLDGLMDQRVR CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEECCCCCCCEEHHHHHHHHHH DAIETELAQKGFSKSEAAGADLLVNYLTKVDKKINVDTFNTSYGYNPYWGPGWGWGGNVQ HHHHHHHHHCCCCCCHHCHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCCCCCCCCCC TQTTVREYEVGTLIIDLIDNKSGKLVWRGSVADTIRDSNTPQERETKVREAVAGVMLNYP CCHHHHHEECCEEEEEEECCCCCCEEECCCHHHHHCCCCCCHHHHHHHHHHHHHHHEECC PKSDTK CCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA