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The map label for this gene is ygdH [H]

Identifier: 119775553

GI number: 119775553

Start: 2911732

End: 2913087

Strand: Direct

Name: ygdH [H]

Synonym: Sama_2419

Alternate gene names: 119775553

Gene position: 2911732-2913087 (Clockwise)

Preceding gene: 119775552

Following gene: 119775554

Centisome position: 67.62

GC content: 52.58

Gene sequence:

>1356_bases
ATGATAGTGAAAGTCAGTCCCCGTGGTAGCATGGATCAGCTTTCCCAGCTGGAAGTCGATCGTCTCAAGCAAAGTGCCAA
AAGTCCCCTCTATCAACTCTATCGGAACTGTTCACTGGCCGTATTGGCCTCAGGCCTGAAAAGCGACAGCTCATCCGAGC
TGTTCGATAAATACAAAGATTTTGAAATCAATATCCTGCAGCGTGAGCGCGGGGTAAAGCTTGAACTTATCAACCCGCCT
GAACAAGCGTTTGTGGATGGCCAAATCATCGCCGGCATTCAGGAGCATTTGTTCTCTGTGCTCAGAGACATTCTCTACAT
CGCCGACAAGTACGATAATCTCAAACACATCAACCTCACCAATGCCAGTCACATCACCAACGTGGTGTTTGATATCCTCA
GAAACGCCCGGGCCTTGCCGACCAAGAACGATCCCAACGTGGTGGTGTGCTGGGGCGGCCACAGTATCAATGCCCTCGAG
TACCAATACACCCGTGAGGTTGGTTATCAGTTGGGCTTGAGGAAGCTGGATATCTGCACCGGCTGTGGCCCCGGCGCCAT
GGAGGGCCCCATGAAGGGGGCTGCCATCGGTCACGCCAAACAGCGTATTTGTAACGCCAGATACATTGGCCTCACCGAGC
CCAGTATTATCGCCGCCGAGCCCCCCAATCAAATCGTCAACGAGCTGGTGATATTGCCGGATATTGAAAAACGACTGGAG
GCCTTTGTGCGCTTGGGTCACGGCATAGTGATTTTCCCCGGCGGGGCGGGCACGGCCGAAGAACTCCTGTATCTACTGGG
TATACTGCTGAACAAGGCCAACGAGCACATACCCTTTCCACTGGTATTAACCGGTCCCAAAGAAAGCGCCGACTACTTCA
TTAAAATTGATGAATTTGTTGCTGCGACTCTGGGGGAGGAAGCACGCAGTAAATACCACATCATCATCGATAACCCCGAT
GAAGTGGCACGGGTGATGCGCGAAGGGATGGAGCAGGTGAAGGTGTTTCGCAAGACCAATGGCGACGCCTATCCCTATCA
ATGGTCACTGCGTATCGAGCCTGAGTTTCAACTGCCCTTTGTCCCCACACACGAAGTGATGGCCAACCTGCATCTGTATT
TTCAACACAATAAGGCCGAGCTTGCGGCTAACCTGCGCCGGGCATTTTCAGGCATTGTTGCAGGCAACGTGAAAGGTGAA
ACCATTCGTCTCATCAAACGCCATGGTCCCTTTGAGTTGCGGGGCGATCCCAGATTGATGTCGTTAATGGACGACTTGCT
GCAGGCCTTTGTCCGTCAGCAGCGGATGAAACTCCCCGGCAGCGCCTATGAACCCTGTTACAAGATAGTCAAATGA

Upstream 100 bases:

>100_bases
GCCCTCTACAAAGCCAAACATGAGAGCAGAGACAGGGTGATTATCGACTGCTAGCCCCGGTGGGGAGTAAGCAACTCCTG
TCAACGCCCAAGGAGTTGCT

Downstream 100 bases:

>100_bases
ATCGTCTGCTCATCATAGATGGATTAAATCTGGTCCGCCGTATCCATGCCGCCCTGCCCGATGAGGGCGACATGGATACC
CTGTATGACAGGGTCGCCCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 451; Mature: 451

Protein sequence:

>451_residues
MIVKVSPRGSMDQLSQLEVDRLKQSAKSPLYQLYRNCSLAVLASGLKSDSSSELFDKYKDFEINILQRERGVKLELINPP
EQAFVDGQIIAGIQEHLFSVLRDILYIADKYDNLKHINLTNASHITNVVFDILRNARALPTKNDPNVVVCWGGHSINALE
YQYTREVGYQLGLRKLDICTGCGPGAMEGPMKGAAIGHAKQRICNARYIGLTEPSIIAAEPPNQIVNELVILPDIEKRLE
AFVRLGHGIVIFPGGAGTAEELLYLLGILLNKANEHIPFPLVLTGPKESADYFIKIDEFVAATLGEEARSKYHIIIDNPD
EVARVMREGMEQVKVFRKTNGDAYPYQWSLRIEPEFQLPFVPTHEVMANLHLYFQHNKAELAANLRRAFSGIVAGNVKGE
TIRLIKRHGPFELRGDPRLMSLMDDLLQAFVRQQRMKLPGSAYEPCYKIVK

Sequences:

>Translated_451_residues
MIVKVSPRGSMDQLSQLEVDRLKQSAKSPLYQLYRNCSLAVLASGLKSDSSSELFDKYKDFEINILQRERGVKLELINPP
EQAFVDGQIIAGIQEHLFSVLRDILYIADKYDNLKHINLTNASHITNVVFDILRNARALPTKNDPNVVVCWGGHSINALE
YQYTREVGYQLGLRKLDICTGCGPGAMEGPMKGAAIGHAKQRICNARYIGLTEPSIIAAEPPNQIVNELVILPDIEKRLE
AFVRLGHGIVIFPGGAGTAEELLYLLGILLNKANEHIPFPLVLTGPKESADYFIKIDEFVAATLGEEARSKYHIIIDNPD
EVARVMREGMEQVKVFRKTNGDAYPYQWSLRIEPEFQLPFVPTHEVMANLHLYFQHNKAELAANLRRAFSGIVAGNVKGE
TIRLIKRHGPFELRGDPRLMSLMDDLLQAFVRQQRMKLPGSAYEPCYKIVK
>Mature_451_residues
MIVKVSPRGSMDQLSQLEVDRLKQSAKSPLYQLYRNCSLAVLASGLKSDSSSELFDKYKDFEINILQRERGVKLELINPP
EQAFVDGQIIAGIQEHLFSVLRDILYIADKYDNLKHINLTNASHITNVVFDILRNARALPTKNDPNVVVCWGGHSINALE
YQYTREVGYQLGLRKLDICTGCGPGAMEGPMKGAAIGHAKQRICNARYIGLTEPSIIAAEPPNQIVNELVILPDIEKRLE
AFVRLGHGIVIFPGGAGTAEELLYLLGILLNKANEHIPFPLVLTGPKESADYFIKIDEFVAATLGEEARSKYHIIIDNPD
EVARVMREGMEQVKVFRKTNGDAYPYQWSLRIEPEFQLPFVPTHEVMANLHLYFQHNKAELAANLRRAFSGIVAGNVKGE
TIRLIKRHGPFELRGDPRLMSLMDDLLQAFVRQQRMKLPGSAYEPCYKIVK

Specific function: Unknown

COG id: COG1611

COG function: function code R; Predicted Rossmann fold nucleotide-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the LOG family [H]

Homologues:

Organism=Escherichia coli, GI1789159, Length=452, Percent_Identity=65.4867256637168, Blast_Score=606, Evalue=1e-175,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR021826
- InterPro:   IPR005269 [H]

Pfam domain/function: PF11892 DUF3412; PF03641 Lysine_decarbox [H]

EC number: NA

Molecular weight: Translated: 50676; Mature: 50676

Theoretical pI: Translated: 7.62; Mature: 7.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIVKVSPRGSMDQLSQLEVDRLKQSAKSPLYQLYRNCSLAVLASGLKSDSSSELFDKYKD
CEEEECCCCCHHHHHHHHHHHHHHHHCCHHHHHHHCCCHHHHHHCCCCCCCHHHHHHHCC
FEINILQRERGVKLELINPPEQAFVDGQIIAGIQEHLFSVLRDILYIADKYDNLKHINLT
CEEEEEECCCCCEEEEECCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEC
NASHITNVVFDILRNARALPTKNDPNVVVCWGGHSINALEYQYTREVGYQLGLRKLDICT
CHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCEEEEEEC
GCGPGAMEGPMKGAAIGHAKQRICNARYIGLTEPSIIAAEPPNQIVNELVILPDIEKRLE
CCCCCCCCCCCCCCHHHHHHHHHHCCEEECCCCCCEEECCCHHHHHHHEEECCCHHHHHH
AFVRLGHGIVIFPGGAGTAEELLYLLGILLNKANEHIPFPLVLTGPKESADYFIKIDEFV
HHHHHCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCEEEEHHHHH
AATLGEEARSKYHIIIDNPDEVARVMREGMEQVKVFRKTNGDAYPYQWSLRIEPEFQLPF
HHHHCHHHCCCEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCC
VPTHEVMANLHLYFQHNKAELAANLRRAFSGIVAGNVKGETIRLIKRHGPFELRGDPRLM
CCHHHHHHEEEEEEECCHHHHHHHHHHHHHHHHCCCCCCHHHHEEHHCCCEEECCCCHHH
SLMDDLLQAFVRQQRMKLPGSAYEPCYKIVK
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHCC
>Mature Secondary Structure
MIVKVSPRGSMDQLSQLEVDRLKQSAKSPLYQLYRNCSLAVLASGLKSDSSSELFDKYKD
CEEEECCCCCHHHHHHHHHHHHHHHHCCHHHHHHHCCCHHHHHHCCCCCCCHHHHHHHCC
FEINILQRERGVKLELINPPEQAFVDGQIIAGIQEHLFSVLRDILYIADKYDNLKHINLT
CEEEEEECCCCCEEEEECCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEC
NASHITNVVFDILRNARALPTKNDPNVVVCWGGHSINALEYQYTREVGYQLGLRKLDICT
CHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCEEEEEEC
GCGPGAMEGPMKGAAIGHAKQRICNARYIGLTEPSIIAAEPPNQIVNELVILPDIEKRLE
CCCCCCCCCCCCCCHHHHHHHHHHCCEEECCCCCCEEECCCHHHHHHHEEECCCHHHHHH
AFVRLGHGIVIFPGGAGTAEELLYLLGILLNKANEHIPFPLVLTGPKESADYFIKIDEFV
HHHHHCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCEEEEHHHHH
AATLGEEARSKYHIIIDNPDEVARVMREGMEQVKVFRKTNGDAYPYQWSLRIEPEFQLPF
HHHHCHHHCCCEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCC
VPTHEVMANLHLYFQHNKAELAANLRRAFSGIVAGNVKGETIRLIKRHGPFELRGDPRLM
CCHHHHHHEEEEEEECCHHHHHHHHHHHHHHHHCCCCCCHHHHEEHHCCCEEECCCCHHH
SLMDDLLQAFVRQQRMKLPGSAYEPCYKIVK
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]