| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
Click here to switch to the map view.
The map label for this gene is yfjG [H]
Identifier: 119775521
GI number: 119775521
Start: 2867055
End: 2867489
Strand: Reverse
Name: yfjG [H]
Synonym: Sama_2387
Alternate gene names: 119775521
Gene position: 2867489-2867055 (Counterclockwise)
Preceding gene: 119775523
Following gene: 119775520
Centisome position: 66.59
GC content: 51.03
Gene sequence:
>435_bases ATGCCTAAGGTTACCCGAAGCGCACTGGTCAGATTCAGTGCCCGGCAGATGTACGATCTGGTTAATGATGTTGAGTCTTA CAAGGAGTTTTTACCCGGCTGCGTTGGCGGCAAGGTAATTTCATTTGACGGACAAACCATGGTGGCCTCTGTGGATGTGG CCAAGGCAGGCATCGCCAAAACCTTTACCACCCGAAACCAGGTGATCCCGGCCAGGCAAATATCCCTGAAGCTGGAGAAC GGCCCGTTTCGGCATCTGATTGGCGAGTGGCGGTTCACCGAGCTTGCCGAAGATGCATGCAAGGTGGATTTTGAGCTGGA TTTTGAATTTTCCAGTGGCCTTGCGGATTTTGCATTTGGCAAGGTATTCAAAGAATTGGCATCTTCTATGGTGACGGCCT TTACCAACAGGGCCAAGGTAATATATGGCCAGTGA
Upstream 100 bases:
>100_bases TTTATTGGTGAGTTTTTAGTCGTTTTAGCGGTTGCAGCGTTTTAGGCAAGCCGTGTTACAATCGGCGGCTATCCAATTTC AAGAGTTTGAATACACGCGA
Downstream 100 bases:
>100_bases TATCGAAAAATTCGGGGTAGATGTGGTGTATGCCTTACCCCACAAGCAAAAAGTGATTCATGTGATGGTGTCACCGGGCA CCACCTTTATTGAGGCTGTT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 144; Mature: 143
Protein sequence:
>144_residues MPKVTRSALVRFSARQMYDLVNDVESYKEFLPGCVGGKVISFDGQTMVASVDVAKAGIAKTFTTRNQVIPARQISLKLEN GPFRHLIGEWRFTELAEDACKVDFELDFEFSSGLADFAFGKVFKELASSMVTAFTNRAKVIYGQ
Sequences:
>Translated_144_residues MPKVTRSALVRFSARQMYDLVNDVESYKEFLPGCVGGKVISFDGQTMVASVDVAKAGIAKTFTTRNQVIPARQISLKLEN GPFRHLIGEWRFTELAEDACKVDFELDFEFSSGLADFAFGKVFKELASSMVTAFTNRAKVIYGQ >Mature_143_residues PKVTRSALVRFSARQMYDLVNDVESYKEFLPGCVGGKVISFDGQTMVASVDVAKAGIAKTFTTRNQVIPARQISLKLENG PFRHLIGEWRFTELAEDACKVDFELDFEFSSGLADFAFGKVFKELASSMVTAFTNRAKVIYGQ
Specific function: Unknown
COG id: COG2867
COG function: function code I; Oligoketide cyclase/lipid transport protein
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0083 family [H]
Homologues:
Organism=Homo sapiens, GI13376737, Length=136, Percent_Identity=30.1470588235294, Blast_Score=66, Evalue=1e-11, Organism=Homo sapiens, GI151101384, Length=136, Percent_Identity=28.6764705882353, Blast_Score=65, Evalue=2e-11, Organism=Homo sapiens, GI151101386, Length=136, Percent_Identity=28.6764705882353, Blast_Score=65, Evalue=2e-11, Organism=Escherichia coli, GI1788972, Length=142, Percent_Identity=56.3380281690141, Blast_Score=182, Evalue=7e-48,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005031 [H]
Pfam domain/function: PF03364 Polyketide_cyc [H]
EC number: NA
Molecular weight: Translated: 16019; Mature: 15887
Theoretical pI: Translated: 8.21; Mature: 8.21
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPKVTRSALVRFSARQMYDLVNDVESYKEFLPGCVGGKVISFDGQTMVASVDVAKAGIAK CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCEEEEEHHHHHHHHHH TFTTRNQVIPARQISLKLENGPFRHLIGEWRFTELAEDACKVDFELDFEFSSGLADFAFG HHCCCCCCCCCHHEEEEECCCCHHHHHHCCHHHHHHHHHHEECEEEEECCCCCCHHHHHH KVFKELASSMVTAFTNRAKVIYGQ HHHHHHHHHHHHHHHCCCEEEECC >Mature Secondary Structure PKVTRSALVRFSARQMYDLVNDVESYKEFLPGCVGGKVISFDGQTMVASVDVAKAGIAK CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCEEEEEHHHHHHHHHH TFTTRNQVIPARQISLKLENGPFRHLIGEWRFTELAEDACKVDFELDFEFSSGLADFAFG HHCCCCCCCCCHHEEEEECCCCHHHHHHCCHHHHHHHHHHEECEEEEECCCCCCHHHHHH KVFKELASSMVTAFTNRAKVIYGQ HHHHHHHHHHHHHHHCCCEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7524073; 9205837; 9278503 [H]