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The map label for this gene is yafC [H]

Identifier: 119775523

GI number: 119775523

Start: 2868769

End: 2869650

Strand: Reverse

Name: yafC [H]

Synonym: Sama_2389

Alternate gene names: 119775523

Gene position: 2869650-2868769 (Counterclockwise)

Preceding gene: 119775525

Following gene: 119775521

Centisome position: 66.64

GC content: 52.49

Gene sequence:

>882_bases
ATGCGTACGCGATCGGATGATTTGGAAATTTTGCTGACGGTTGTTGATTGTGGTGGCTTTTCCGCAGCGGCCGAACTGCT
CGATATCCAGGTTGCCAGGGTGTCCAGAGCCGTGAGTAAGGTGGAGAACCAACTGGGAGTTTCCATTCTTAATCGTACAA
CCAGGCGAATAGAGCTGACTGATGAAGGCAGGCAGTTTGTGGAGTCTGTGAGGGGCGGGCTACTGCAAATTCAGCGCGCC
GAAGAAGATATTATCACCCGGGGTGAAGTCCCGGCGGGCCGTCTCAGGGTGGATGCCGCCAGCCCCTTTGTATTTCACCA
ACTGGTGCCCTTAATTAAACCGTTCAACCAGATGTACCCGGATATCCGGATTGAACTGACCTCCAACGAAGGTTTTGTCG
ACTTGTTGGAGAAGCGAACCGATGTGGCCATCCGCATAGGCCCCATGAGCGACTCCACTCTTCACGCCAGGCCTTTGGGA
CGAAGTCGTCTTTATATTGTTGCCGCCCCGGAGTATCTGGCACAGCGGGGGATCCCACGCAAGACTGCCGATCTTGAACA
CCACGACACCATAGGGTTTTCTGCGCCACGGTCATTAAATGAGTGGCCTTTGAAAGGTTTTGTGGGCTTGGAGCCGGCGC
TTACCTCGAGTAATGGCGAAACGGTGAGGCAGTTGGCACTGTCGGGCAACGGGATAGCCTGTTTGTCGGGTTTTATGGTC
AATAAGGATATTGAAGAAGGGCGGTTGATGGTGTTGCTGGAAACTGAAACGATGATGAATACCGCAAGAGAGCAAGTGAA
TGCGGTATTTTACAAGTCATCCTCGGTGGCCAAACGTATCTCGGTTTTCATCGATTTCATTCAGCCCAAATTGGCGCTAT
GA

Upstream 100 bases:

>100_bases
GGGATTATGCGTTGGACTTTAGTTGTGAAAAATGCGGATTATGGCAAATTATATTTGTTATATTTGCAATAATTGCTTGA
GCTGTGGATGAGAGGTGAGG

Downstream 100 bases:

>100_bases
CGTGGGAACGCCGTGAGTATCGGGATTCCCGGTGCTAAAACTGACAGTGAAGCACCACGACACAGGGGGAGCAAACAAAG
AAAAAGGGCCATCTTTGCGG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 293; Mature: 293

Protein sequence:

>293_residues
MRTRSDDLEILLTVVDCGGFSAAAELLDIQVARVSRAVSKVENQLGVSILNRTTRRIELTDEGRQFVESVRGGLLQIQRA
EEDIITRGEVPAGRLRVDAASPFVFHQLVPLIKPFNQMYPDIRIELTSNEGFVDLLEKRTDVAIRIGPMSDSTLHARPLG
RSRLYIVAAPEYLAQRGIPRKTADLEHHDTIGFSAPRSLNEWPLKGFVGLEPALTSSNGETVRQLALSGNGIACLSGFMV
NKDIEEGRLMVLLETETMMNTAREQVNAVFYKSSSVAKRISVFIDFIQPKLAL

Sequences:

>Translated_293_residues
MRTRSDDLEILLTVVDCGGFSAAAELLDIQVARVSRAVSKVENQLGVSILNRTTRRIELTDEGRQFVESVRGGLLQIQRA
EEDIITRGEVPAGRLRVDAASPFVFHQLVPLIKPFNQMYPDIRIELTSNEGFVDLLEKRTDVAIRIGPMSDSTLHARPLG
RSRLYIVAAPEYLAQRGIPRKTADLEHHDTIGFSAPRSLNEWPLKGFVGLEPALTSSNGETVRQLALSGNGIACLSGFMV
NKDIEEGRLMVLLETETMMNTAREQVNAVFYKSSSVAKRISVFIDFIQPKLAL
>Mature_293_residues
MRTRSDDLEILLTVVDCGGFSAAAELLDIQVARVSRAVSKVENQLGVSILNRTTRRIELTDEGRQFVESVRGGLLQIQRA
EEDIITRGEVPAGRLRVDAASPFVFHQLVPLIKPFNQMYPDIRIELTSNEGFVDLLEKRTDVAIRIGPMSDSTLHARPLG
RSRLYIVAAPEYLAQRGIPRKTADLEHHDTIGFSAPRSLNEWPLKGFVGLEPALTSSNGETVRQLALSGNGIACLSGFMV
NKDIEEGRLMVLLETETMMNTAREQVNAVFYKSSSVAKRISVFIDFIQPKLAL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786401, Length=291, Percent_Identity=43.9862542955326, Blast_Score=252, Evalue=2e-68,
Organism=Escherichia coli, GI1789639, Length=256, Percent_Identity=33.203125, Blast_Score=130, Evalue=8e-32,
Organism=Escherichia coli, GI1789440, Length=291, Percent_Identity=28.8659793814433, Blast_Score=112, Evalue=3e-26,
Organism=Escherichia coli, GI87081978, Length=294, Percent_Identity=28.5714285714286, Blast_Score=111, Evalue=4e-26,
Organism=Escherichia coli, GI145693193, Length=287, Percent_Identity=25.4355400696864, Blast_Score=107, Evalue=6e-25,
Organism=Escherichia coli, GI1787128, Length=293, Percent_Identity=25.5972696245734, Blast_Score=105, Evalue=3e-24,
Organism=Escherichia coli, GI1787589, Length=260, Percent_Identity=28.0769230769231, Blast_Score=93, Evalue=3e-20,
Organism=Escherichia coli, GI1789173, Length=277, Percent_Identity=25.6317689530686, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1788481, Length=290, Percent_Identity=24.1379310344828, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI1788706, Length=188, Percent_Identity=25, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI157672245, Length=174, Percent_Identity=29.8850574712644, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1786448, Length=248, Percent_Identity=26.2096774193548, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI87082132, Length=259, Percent_Identity=24.3243243243243, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI145693105, Length=162, Percent_Identity=24.0740740740741, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32490; Mature: 32490

Theoretical pI: Translated: 6.54; Mature: 6.54

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRTRSDDLEILLTVVDCGGFSAAAELLDIQVARVSRAVSKVENQLGVSILNRTTRRIELT
CCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEC
DEGRQFVESVRGGLLQIQRAEEDIITRGEVPAGRLRVDAASPFVFHQLVPLIKPFNQMYP
HHHHHHHHHHCCCCEEEEHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCC
DIRIELTSNEGFVDLLEKRTDVAIRIGPMSDSTLHARPLGRSRLYIVAAPEYLAQRGIPR
CEEEEEECCCCHHHHHHCCCCEEEEEECCCCCCEEECCCCCCEEEEEECHHHHHHCCCCC
KTADLEHHDTIGFSAPRSLNEWPLKGFVGLEPALTSSNGETVRQLALSGNGIACLSGFMV
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCHHHHHHHHCCCCCEEEECEEE
NKDIEEGRLMVLLETETMMNTAREQVNAVFYKSSSVAKRISVFIDFIQPKLAL
CCCCCCCEEEEEEECHHHHHHHHHHHHEEEECCHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MRTRSDDLEILLTVVDCGGFSAAAELLDIQVARVSRAVSKVENQLGVSILNRTTRRIELT
CCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEC
DEGRQFVESVRGGLLQIQRAEEDIITRGEVPAGRLRVDAASPFVFHQLVPLIKPFNQMYP
HHHHHHHHHHCCCCEEEEHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCC
DIRIELTSNEGFVDLLEKRTDVAIRIGPMSDSTLHARPLGRSRLYIVAAPEYLAQRGIPR
CEEEEEECCCCHHHHHHCCCCEEEEEECCCCCCEEECCCCCCEEEEEECHHHHHHCCCCC
KTADLEHHDTIGFSAPRSLNEWPLKGFVGLEPALTSSNGETVRQLALSGNGIACLSGFMV
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCHHHHHHHHCCCCCEEEECEEE
NKDIEEGRLMVLLETETMMNTAREQVNAVFYKSSSVAKRISVFIDFIQPKLAL
CCCCCCCEEEEEEECHHHHHHHHHHHHEEEECCHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]