Click here to switch to the map view.

The map label for this gene is yfjF [C]

Identifier: 119775520

GI number: 119775520

Start: 2866727

End: 2867065

Strand: Reverse

Name: yfjF [C]

Synonym: Sama_2386

Alternate gene names: 119775520

Gene position: 2867065-2866727 (Counterclockwise)

Preceding gene: 119775521

Following gene: 119775518

Centisome position: 66.58

GC content: 50.44

Gene sequence:

>339_bases
ATGGCCAGTGATATCGAAAAATTCGGGGTAGATGTGGTGTATGCCTTACCCCACAAGCAAAAAGTGATTCATGTGATGGT
GTCACCGGGCACCACCTTTATTGAGGCTGTTCGTCAAAGTAATATCTGCAGCTTTTTCCCGGAGATTGAGCTCGACTCAG
TGAAACTTGGCAGTTTTAGCCGCTTGGTAAAGCATGACGACCAATTGCAACCGGGAAACCGGGTTGAGATCTATCGCCCC
TTGATTGCCGACCCTAAAGACGTCAGACGCCAGCGGGCGGAAAAAGCCAAGGACGAGGGGCGTGCAAGCAAGGTAACAGG
TGGCAAAATCCAATCCTGA

Upstream 100 bases:

>100_bases
GAATTTTCCAGTGGCCTTGCGGATTTTGCATTTGGCAAGGTATTCAAAGAATTGGCATCTTCTATGGTGACGGCCTTTAC
CAACAGGGCCAAGGTAATAT

Downstream 100 bases:

>100_bases
AGTGTTGAATCCGATATATGGACAAAACGGATTCAAATACCATGGCCGGCTCACTACTGAGCAACAGCCAATAAAAAAGC
GCCGCGTGGCGCTTTTTTAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 112; Mature: 111

Protein sequence:

>112_residues
MASDIEKFGVDVVYALPHKQKVIHVMVSPGTTFIEAVRQSNICSFFPEIELDSVKLGSFSRLVKHDDQLQPGNRVEIYRP
LIADPKDVRRQRAEKAKDEGRASKVTGGKIQS

Sequences:

>Translated_112_residues
MASDIEKFGVDVVYALPHKQKVIHVMVSPGTTFIEAVRQSNICSFFPEIELDSVKLGSFSRLVKHDDQLQPGNRVEIYRP
LIADPKDVRRQRAEKAKDEGRASKVTGGKIQS
>Mature_111_residues
ASDIEKFGVDVVYALPHKQKVIHVMVSPGTTFIEAVRQSNICSFFPEIELDSVKLGSFSRLVKHDDQLQPGNRVEIYRPL
IADPKDVRRQRAEKAKDEGRASKVTGGKIQS

Specific function: Unknown

COG id: COG2914

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0125 (rnfH) family [H]

Homologues:

Organism=Escherichia coli, GI87082139, Length=93, Percent_Identity=48.3870967741936, Blast_Score=91, Evalue=2e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005346 [H]

Pfam domain/function: PF03658 UPF0125 [H]

EC number: NA

Molecular weight: Translated: 12551; Mature: 12419

Theoretical pI: Translated: 9.63; Mature: 9.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASDIEKFGVDVVYALPHKQKVIHVMVSPGTTFIEAVRQSNICSFFPEIELDSVKLGSFS
CCCCCHHHCCEEEEECCCCCEEEEEEECCCHHHHHHHHHCCCCCCCCCCCCCCCCCCHHH
RLVKHDDQLQPGNRVEIYRPLIADPKDVRRQRAEKAKDEGRASKVTGGKIQS
HHHHCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure 
ASDIEKFGVDVVYALPHKQKVIHVMVSPGTTFIEAVRQSNICSFFPEIELDSVKLGSFS
CCCCHHHCCEEEEECCCCCEEEEEEECCCHHHHHHHHHCCCCCCCCCCCCCCCCCCHHH
RLVKHDDQLQPGNRVEIYRPLIADPKDVRRQRAEKAKDEGRASKVTGGKIQS
HHHHCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12368813 [H]