| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
Click here to switch to the map view.
The map label for this gene is 119775518
Identifier: 119775518
GI number: 119775518
Start: 2865014
End: 2865805
Strand: Reverse
Name: 119775518
Synonym: Sama_2384
Alternate gene names: NA
Gene position: 2865805-2865014 (Counterclockwise)
Preceding gene: 119775520
Following gene: 119775517
Centisome position: 66.55
GC content: 53.28
Gene sequence:
>792_bases TTGGGTAGTTTGGTCTGTGTGGGCACAGGGATAGGGTTGGCTGGACAGATCAGCGTCCGGGCCAAGAGTCACATCATCCA CGCTGAACTGGTATTCAGTTTGCTGCCCGATGGTTTTGCCCAGCATTATCTTGAAGAACTTAATCCCAATGTGGTTAACC TCCAGCAATTTTATGCTCAAGGTGATGAGGTAAAGAGCCGGCGATTGACTTACGAGCAAATGACAGAGTCAATGTTGGCA GCGGTGAGAACGGGTAAAAAAGTGGTAGGGGCGTTTTATGGGCATCCTGGGGTGTTTGCCTGTGTGCCACATATGGCCAT AAGCCGTGCCCGCAGTGAGGGGTTTGATGCCTGGATGGAGCCCGGTATTTCGGCTGAAGATTGCCTCTGGGCCGATCTGG GTATCGACCCGGGGCAAAGTGGTCACCAAAGTATGGAAGCCAGCCAGTTTTTGTTTTACCAACATGTGCCTAATCCATGT TGCCACTTATTGCTCTGGCAAATAGCCCTTGCCGGAGAACACACGCTGACCAAGTTCCATACCAGTTCAGACAGATTGCA GGTGTTGGTGGAGCATTTAATGCAGTGGTATCCGCCGGAGCATGAGGTTGTGCTGTATGAGGCTGCATTTTTGCCGGTGC ATGAACCCAGTGTGCACCGGGTAAAGCTTCACGAGTTACCCGGCGCTCCCATGGGCCCTGCGACAACCCTGCTGGTGCCG CCTGCCAGGCGGCTTGAATACAATCTTGAGGTATTGGCCCGACTTGGGCTGAGCCCTGAGGATCTTGCCTGA
Upstream 100 bases:
>100_bases TTAGCTCGATGGTTTAGGGTGAAAAAGAGCGCTCTGTGTATTGCAATACGCCCGGAAAGTTATAAAAATGTGATTTTTGA GCAGGAACTCGGAGTAGGTC
Downstream 100 bases:
>100_bases CAGGGTAAGTGATTGTTCGACAAATCCACGACAGCGGAAAATAAGGAGAACCAGGTGTCAAAACTGACAGATTTTTTAAA GCAGCTTGGGGAAGATGCTG
Product: methylase
Products: NA
Alternate protein names: Methylase; Tetrapyrrole Methylase; Uroporphyrinogen III Methylase; Tetrapyrrole Methylases Domain Protein
Number of amino acids: Translated: 263; Mature: 262
Protein sequence:
>263_residues MGSLVCVGTGIGLAGQISVRAKSHIIHAELVFSLLPDGFAQHYLEELNPNVVNLQQFYAQGDEVKSRRLTYEQMTESMLA AVRTGKKVVGAFYGHPGVFACVPHMAISRARSEGFDAWMEPGISAEDCLWADLGIDPGQSGHQSMEASQFLFYQHVPNPC CHLLLWQIALAGEHTLTKFHTSSDRLQVLVEHLMQWYPPEHEVVLYEAAFLPVHEPSVHRVKLHELPGAPMGPATTLLVP PARRLEYNLEVLARLGLSPEDLA
Sequences:
>Translated_263_residues MGSLVCVGTGIGLAGQISVRAKSHIIHAELVFSLLPDGFAQHYLEELNPNVVNLQQFYAQGDEVKSRRLTYEQMTESMLA AVRTGKKVVGAFYGHPGVFACVPHMAISRARSEGFDAWMEPGISAEDCLWADLGIDPGQSGHQSMEASQFLFYQHVPNPC CHLLLWQIALAGEHTLTKFHTSSDRLQVLVEHLMQWYPPEHEVVLYEAAFLPVHEPSVHRVKLHELPGAPMGPATTLLVP PARRLEYNLEVLARLGLSPEDLA >Mature_262_residues GSLVCVGTGIGLAGQISVRAKSHIIHAELVFSLLPDGFAQHYLEELNPNVVNLQQFYAQGDEVKSRRLTYEQMTESMLAA VRTGKKVVGAFYGHPGVFACVPHMAISRARSEGFDAWMEPGISAEDCLWADLGIDPGQSGHQSMEASQFLFYQHVPNPCC HLLLWQIALAGEHTLTKFHTSSDRLQVLVEHLMQWYPPEHEVVLYEAAFLPVHEPSVHRVKLHELPGAPMGPATTLLVPP ARRLEYNLEVLARLGLSPEDLA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 29108; Mature: 28977
Theoretical pI: Translated: 6.10; Mature: 6.10
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 4.9 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGSLVCVGTGIGLAGQISVRAKSHIIHAELVFSLLPDGFAQHYLEELNPNVVNLQQFYAQ CCCEEEEECCCCCEEEEEEEHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCEEHHHHHHCC GDEVKSRRLTYEQMTESMLAAVRTGKKVVGAFYGHPGVFACVPHMAISRARSEGFDAWME CHHHHHHHCCHHHHHHHHHHHHHHCHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHC PGISAEDCLWADLGIDPGQSGHQSMEASQFLFYQHVPNPCCHLLLWQIALAGEHTLTKFH CCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHEEEC TSSDRLQVLVEHLMQWYPPEHEVVLYEAAFLPVHEPSVHRVKLHELPGAPMGPATTLLVP CCHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCEEEEECCCCCCCCCCEEEEEC PARRLEYNLEVLARLGLSPEDLA CHHHHHHHHHHHHHCCCCHHCCC >Mature Secondary Structure GSLVCVGTGIGLAGQISVRAKSHIIHAELVFSLLPDGFAQHYLEELNPNVVNLQQFYAQ CCEEEEECCCCCEEEEEEEHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCEEHHHHHHCC GDEVKSRRLTYEQMTESMLAAVRTGKKVVGAFYGHPGVFACVPHMAISRARSEGFDAWME CHHHHHHHCCHHHHHHHHHHHHHHCHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHC PGISAEDCLWADLGIDPGQSGHQSMEASQFLFYQHVPNPCCHLLLWQIALAGEHTLTKFH CCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHEEEC TSSDRLQVLVEHLMQWYPPEHEVVLYEAAFLPVHEPSVHRVKLHELPGAPMGPATTLLVP CCHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCEEEEECCCCCCCCCCEEEEEC PARRLEYNLEVLARLGLSPEDLA CHHHHHHHHHHHHHCCCCHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA