Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

Click here to switch to the map view.

The map label for this gene is 119775507

Identifier: 119775507

GI number: 119775507

Start: 2850876

End: 2851619

Strand: Direct

Name: 119775507

Synonym: Sama_2373

Alternate gene names: NA

Gene position: 2850876-2851619 (Clockwise)

Preceding gene: 119775504

Following gene: 119775508

Centisome position: 66.2

GC content: 51.34

Gene sequence:

>744_bases
ATGATTATTCTGGTCGGCGGTGAAAAAGGTGGCAGCGGCAAGAGCTGTCTGGCACAAAACATAGCCGTGTTTCTTACCAA
GGAATGCGGTGGGTCAGTGATCATGGTTGACTGTGATCCCCAGCGTACCACGTCAGATTGGATCCAGGCCCGCAACAATA
ATCCCAAGCTTCCTGCAATCAATTGCGTGCAGCTGTATGGCAAAATTCGTAACGACTTGCTGAGCCTCGAACAGCACTAC
GATTACGTCATCGTGGATTGTGGTGGTCAGGATAACCTGGCGCTGCGTGCCACCATGTCTGTTGCCTCCCACATCCTGAT
GCCCCTTCGTCCCAAACGCCGCGATCTCAAGACCGTGAGCCACATGGACGACGTGGTTGCCACCTGTATGATGATAAACC
CCAAGATGAAGGCATCGTTTGTGATAACCCAGTGCCCGACGCTGCCAAATCAGTCCAACCGGATCCTGGAAGCCAAGGAA
GTATGCCGCACATACGACATCAATGTGCTCGACGCCATTACTTACTCACGCAATATCTATGACGACAGTGAAGAGTCGGG
TCTGTCTGTGATAGAAATTGATCACGAAGGCAAAGCCGCCGATGAAATTCGCGCCATCGCCTGTGAAATGCTGGGCGCTG
CCAATGCTCAGGAAGTGCGTAATCAGTTGCAGCAGACTCAAATCAGTAAAATGAGAGGTCAATATGGGACTGGCAGATCT
CAAGAAAAACTCTACGCCGTCTAA

Upstream 100 bases:

>100_bases
ATATACACCCCAGGCACTAGATTGAGCTTACCGTAGGTTGTGCGTTAGCAGGGACCTCACTGTAAATCACAGGCCCAAAA
GCAAATACAGGGGTAAAAAG

Downstream 100 bases:

>100_bases
TAACCGGCTGGCGTTGGCCGCTTCCATTGAAGACTTTATCGAAGGGGCCAACCTGTATGCCATGGGGCTGCCACAGCAGC
GCGGTGCGGTGATATCACTG

Product: hypothetical protein

Products: NA

Alternate protein names: Cobyrinic Acid A C-Diamide Synthase; Partition Protein; Plasmid Partitioning Protein; ParA Family Protein; ParA-Like Protein; Plasmid Partition Protein ParA; Partitioning Protein; Plasmid Partition Protein ParA-Like Protein; ParA Protein; PARA Protein; Plasmid Stability Protein ParA; Plasmid Stability/Partitioning Protein; ATPases Involved In Chromosome Partitioning; CobQ/CobB/MinD/ParA Domain-Containing Protein; Plasmid Partitioning-Family Protein; ParA Partitioning Protein; Plasmid Segregation Oscillating ATPase ParF; Plasmid Partition Protein A; Chromosome Partitioning ATPase; ATPase ParA Type; Partitioning Protein ParA Family; Plasmid Stability Protein; ATPase Putative Partition Protein; Chromosome Partitioning ATPase ParA; Chromosome Partitioning; ATPase Involved In Chromosome Partitioning-Like Protein; ATPase; YafB Protein; Chromosome Partitioning Protein; MinD/ParA Family ATPase; Partition Protein A; ParA Partitioning-Like Protein; Chromosome Partitioning Protein ParA; Partition Protein ATPase Activity; Partitioning Protein ParA-Family; ParA Plasmid Partitioning Protein

Number of amino acids: Translated: 247; Mature: 247

Protein sequence:

>247_residues
MIILVGGEKGGSGKSCLAQNIAVFLTKECGGSVIMVDCDPQRTTSDWIQARNNNPKLPAINCVQLYGKIRNDLLSLEQHY
DYVIVDCGGQDNLALRATMSVASHILMPLRPKRRDLKTVSHMDDVVATCMMINPKMKASFVITQCPTLPNQSNRILEAKE
VCRTYDINVLDAITYSRNIYDDSEESGLSVIEIDHEGKAADEIRAIACEMLGAANAQEVRNQLQQTQISKMRGQYGTGRS
QEKLYAV

Sequences:

>Translated_247_residues
MIILVGGEKGGSGKSCLAQNIAVFLTKECGGSVIMVDCDPQRTTSDWIQARNNNPKLPAINCVQLYGKIRNDLLSLEQHY
DYVIVDCGGQDNLALRATMSVASHILMPLRPKRRDLKTVSHMDDVVATCMMINPKMKASFVITQCPTLPNQSNRILEAKE
VCRTYDINVLDAITYSRNIYDDSEESGLSVIEIDHEGKAADEIRAIACEMLGAANAQEVRNQLQQTQISKMRGQYGTGRS
QEKLYAV
>Mature_247_residues
MIILVGGEKGGSGKSCLAQNIAVFLTKECGGSVIMVDCDPQRTTSDWIQARNNNPKLPAINCVQLYGKIRNDLLSLEQHY
DYVIVDCGGQDNLALRATMSVASHILMPLRPKRRDLKTVSHMDDVVATCMMINPKMKASFVITQCPTLPNQSNRILEAKE
VCRTYDINVLDAITYSRNIYDDSEESGLSVIEIDHEGKAADEIRAIACEMLGAANAQEVRNQLQQTQISKMRGQYGTGRS
QEKLYAV

Specific function: Unknown

COG id: COG1192

COG function: function code D; ATPases involved in chromosome partitioning

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 27344; Mature: 27344

Theoretical pI: Translated: 6.50; Mature: 6.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.6 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
7.7 %Cys+Met (Translated Protein)
3.6 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
7.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIILVGGEKGGSGKSCLAQNIAVFLTKECGGSVIMVDCDPQRTTSDWIQARNNNPKLPAI
CEEEEECCCCCCCHHHHHHHHHEEEEECCCCCEEEEECCCCCCCHHHHHCCCCCCCCCHH
NCVQLYGKIRNDLLSLEQHYDYVIVDCGGQDNLALRATMSVASHILMPLRPKRRDLKTVS
HHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCEEEHHHHHHHHHHHCCCCCCHHHHHHHH
HMDDVVATCMMINPKMKASFVITQCPTLPNQSNRILEAKEVCRTYDINVLDAITYSRNIY
HHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHCCCCC
DDSEESGLSVIEIDHEGKAADEIRAIACEMLGAANAQEVRNQLQQTQISKMRGQYGTGRS
CCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCC
QEKLYAV
CCCEECC
>Mature Secondary Structure
MIILVGGEKGGSGKSCLAQNIAVFLTKECGGSVIMVDCDPQRTTSDWIQARNNNPKLPAI
CEEEEECCCCCCCHHHHHHHHHEEEEECCCCCEEEEECCCCCCCHHHHHCCCCCCCCCHH
NCVQLYGKIRNDLLSLEQHYDYVIVDCGGQDNLALRATMSVASHILMPLRPKRRDLKTVS
HHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCEEEHHHHHHHHHHHCCCCCCHHHHHHHH
HMDDVVATCMMINPKMKASFVITQCPTLPNQSNRILEAKEVCRTYDINVLDAITYSRNIY
HHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHCCCCC
DDSEESGLSVIEIDHEGKAADEIRAIACEMLGAANAQEVRNQLQQTQISKMRGQYGTGRS
CCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCC
QEKLYAV
CCCEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA