| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is ushA [C]
Identifier: 119775504
GI number: 119775504
Start: 2847440
End: 2849161
Strand: Direct
Name: ushA [C]
Synonym: Sama_2370
Alternate gene names: 119775504
Gene position: 2847440-2849161 (Clockwise)
Preceding gene: 119775503
Following gene: 119775507
Centisome position: 66.13
GC content: 54.99
Gene sequence:
>1722_bases GTGCAGACTTCAGCTTATTACCTGCAACTGGCACACATCAACGATTGCCACAGTAATTTCGATCCCGTCGCCCTGAGCCT GTCGGTTGACCATCACGGCTCACAGATTCGCGTAGCTTGCCACAGCGGCGGATATGGCCGCATCGCAACCATACTGGAGC AAGCCCGCGATAAGGCCAAGCGCGATAACCAGGCCTTTTTATTTCTCCATGGTGGCGATACCTTTCAAGGGACCCTCTAT TTCAACGAGTTTAAGGGCCGCGCCAACGCCAAACTACTGAACATGCTCAGGCCCGATGCCATGGTACTGGGCAACCATGA AATCGACAGTGGCAATGCCCCGCTCCACCGCTTTGTCGAGGCCATTGATTTTCCTATGCTGGCCGGCAACATGGACTTGA GCGGCGAAGATCCCACCAAAGCATTTCCGCTGGCCCGGTTGCCCAATCTCTATTACCTCGATCCAAGTACCGGCTGTGCC AGAGTCATAAAACATCCCCTCGGTGACAGAGAGCTCGCCATTGTCGGCATCACGCTGGATCAGATGAGTGTGATTGCCAG GCCCGACCCGGATACCCATTTCGCCAATACGCTGGAAACCTGTAAACGCACGGTGAAGGCCCTCAAGGCTGAAGGCATAG ATCATATTCTGGTGCTCAGCCATCTTGGTCTCGATGGTGACCGCAAACTGGCCGCTTCCGTGGATGGCATAAGCCTTATC GTTGGTGGCCACAGCCATACCCTGATGGGAGATTTTGCCGAGTTGGGATTACCGGCCGTCCCCTGGGGCGAATGCGTCAA TGGCACTGCCATATTGCATGCGGGCAAGTATGCCGAAACACTCGGGCTTGCAGACATCGGCTTTAACGAAAAGGGACTAG TCACCGCCCTTAATGGCGGCAATTATCTGATGCTGGATGAACATCTGGTTATCGATGGCGGCGATGAGATGACACGCAAT GCCATCATCGCCAGGCTGAAGGCCCATCCAAATATTCTCTGGCCAGCGCAGCATCCCGACGTCCAGCAGGTGATAGATAC TGAGTTCCGACCCGCTATCCGTGCCCTGGATCATCAGGTACTTGCCATGGTTCCCCGAGAACTGGTGCACACCCGTTTGC CCAGTAAGGCCTTGCCCCATGGCAGCGAAGTCGCCCCCTGGGTTAGCCGTGCCATGTACGAAGAGTCCCGCATTCTGGAT GGTGCAGTCCAATTTGCGCTGCATAACGCTGGCGGTGTCAGGCAGTCTCTCAGCCGTGGCCAAATTACCCTTGCCGATGT GCTTGGCCGCTTGTTGCCATTTGAACTGCCGCTGGTGAAATATGCCATCGAAGGTCAGTATCTGTTTGAGGCGCTTGAAT CTGCCATCAACAGTGCAACCAATAACAGTGTTGTTGGCACAGGTGCGGGGAGCTTTCCTTATACCTTTGGTCTTAAGTAT CACTATGATGGCCGTCGCCCCATGGGGGAGAGGGTGCTGTCATTAACGGTCGCGCAAAATAACATTTGGGTACCAGTAAA GCGCCAGCAGGTGTATGTGGGGGTTTCATCGGCGTACACCGCATCGGGTAAGGAAGGTTATGATGCCCTGGCTTGCTGCC ATTGGCAGGAGTCTATCGATGGCCTAACACTGCCCGGCGCCTTTATCCGCTTTATCCAACGCCACGGCGAAATTGCCGAT GAGTTGGCGCCGCAGTTATCCTACGTCAGTCATCTTGGCTGA
Upstream 100 bases:
>100_bases CAAGGAGAAAGGCATTCGACTGTCAGATGACCAGGACGGAGACCTTCACTCATTCTGATTTCTGCCCGGCTCTTGCCGGG CATTGTTAATAAGGCGTTTT
Downstream 100 bases:
>100_bases CGGCAGGGCTCATCCGCCTTCCGGGCGGCTGAGCCACTTTTCCATACTGAAATTCACCAGGATTTGCCCGTGTCTTGGGT GTTCATTCCGGCTAAGCTCA
Product: 5'-nucleotidase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 573; Mature: 573
Protein sequence:
>573_residues MQTSAYYLQLAHINDCHSNFDPVALSLSVDHHGSQIRVACHSGGYGRIATILEQARDKAKRDNQAFLFLHGGDTFQGTLY FNEFKGRANAKLLNMLRPDAMVLGNHEIDSGNAPLHRFVEAIDFPMLAGNMDLSGEDPTKAFPLARLPNLYYLDPSTGCA RVIKHPLGDRELAIVGITLDQMSVIARPDPDTHFANTLETCKRTVKALKAEGIDHILVLSHLGLDGDRKLAASVDGISLI VGGHSHTLMGDFAELGLPAVPWGECVNGTAILHAGKYAETLGLADIGFNEKGLVTALNGGNYLMLDEHLVIDGGDEMTRN AIIARLKAHPNILWPAQHPDVQQVIDTEFRPAIRALDHQVLAMVPRELVHTRLPSKALPHGSEVAPWVSRAMYEESRILD GAVQFALHNAGGVRQSLSRGQITLADVLGRLLPFELPLVKYAIEGQYLFEALESAINSATNNSVVGTGAGSFPYTFGLKY HYDGRRPMGERVLSLTVAQNNIWVPVKRQQVYVGVSSAYTASGKEGYDALACCHWQESIDGLTLPGAFIRFIQRHGEIAD ELAPQLSYVSHLG
Sequences:
>Translated_573_residues MQTSAYYLQLAHINDCHSNFDPVALSLSVDHHGSQIRVACHSGGYGRIATILEQARDKAKRDNQAFLFLHGGDTFQGTLY FNEFKGRANAKLLNMLRPDAMVLGNHEIDSGNAPLHRFVEAIDFPMLAGNMDLSGEDPTKAFPLARLPNLYYLDPSTGCA RVIKHPLGDRELAIVGITLDQMSVIARPDPDTHFANTLETCKRTVKALKAEGIDHILVLSHLGLDGDRKLAASVDGISLI VGGHSHTLMGDFAELGLPAVPWGECVNGTAILHAGKYAETLGLADIGFNEKGLVTALNGGNYLMLDEHLVIDGGDEMTRN AIIARLKAHPNILWPAQHPDVQQVIDTEFRPAIRALDHQVLAMVPRELVHTRLPSKALPHGSEVAPWVSRAMYEESRILD GAVQFALHNAGGVRQSLSRGQITLADVLGRLLPFELPLVKYAIEGQYLFEALESAINSATNNSVVGTGAGSFPYTFGLKY HYDGRRPMGERVLSLTVAQNNIWVPVKRQQVYVGVSSAYTASGKEGYDALACCHWQESIDGLTLPGAFIRFIQRHGEIAD ELAPQLSYVSHLG >Mature_573_residues MQTSAYYLQLAHINDCHSNFDPVALSLSVDHHGSQIRVACHSGGYGRIATILEQARDKAKRDNQAFLFLHGGDTFQGTLY FNEFKGRANAKLLNMLRPDAMVLGNHEIDSGNAPLHRFVEAIDFPMLAGNMDLSGEDPTKAFPLARLPNLYYLDPSTGCA RVIKHPLGDRELAIVGITLDQMSVIARPDPDTHFANTLETCKRTVKALKAEGIDHILVLSHLGLDGDRKLAASVDGISLI VGGHSHTLMGDFAELGLPAVPWGECVNGTAILHAGKYAETLGLADIGFNEKGLVTALNGGNYLMLDEHLVIDGGDEMTRN AIIARLKAHPNILWPAQHPDVQQVIDTEFRPAIRALDHQVLAMVPRELVHTRLPSKALPHGSEVAPWVSRAMYEESRILD GAVQFALHNAGGVRQSLSRGQITLADVLGRLLPFELPLVKYAIEGQYLFEALESAINSATNNSVVGTGAGSFPYTFGLKY HYDGRRPMGERVLSLTVAQNNIWVPVKRQQVYVGVSSAYTASGKEGYDALACCHWQESIDGLTLPGAFIRFIQRHGEIAD ELAPQLSYVSHLG
Specific function: Degradation Of External Udp-Glucose To Uridine Monophosphate And Glucose-1-Phosphate, Which Can Then Be Used By The Cell. [C]
COG id: COG0737
COG function: function code F; 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases
Gene ontology:
Cell location: Cell membrane; Lipid-anchor (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the 5'-nucleotidase family [H]
Homologues:
Organism=Homo sapiens, GI4505467, Length=541, Percent_Identity=25.6931608133087, Blast_Score=127, Evalue=4e-29, Organism=Escherichia coli, GI1786687, Length=282, Percent_Identity=24.468085106383, Blast_Score=68, Evalue=1e-12, Organism=Drosophila melanogaster, GI28573524, Length=593, Percent_Identity=27.4873524451939, Blast_Score=162, Evalue=5e-40, Organism=Drosophila melanogaster, GI24641187, Length=540, Percent_Identity=27.4074074074074, Blast_Score=151, Evalue=1e-36, Organism=Drosophila melanogaster, GI19922446, Length=522, Percent_Identity=25.8620689655172, Blast_Score=132, Evalue=5e-31, Organism=Drosophila melanogaster, GI24654424, Length=522, Percent_Identity=25.8620689655172, Blast_Score=132, Evalue=5e-31, Organism=Drosophila melanogaster, GI19922444, Length=579, Percent_Identity=25.2158894645941, Blast_Score=131, Evalue=1e-30, Organism=Drosophila melanogaster, GI221329836, Length=539, Percent_Identity=24.6753246753247, Blast_Score=128, Evalue=1e-29,
Paralogues:
None
Copy number: 60 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008334 - InterPro: IPR006146 - InterPro: IPR006179 - InterPro: IPR004843 - InterPro: IPR006420 [H]
Pfam domain/function: PF02872 5_nucleotid_C; PF00149 Metallophos [H]
EC number: =3.1.3.5 [H]
Molecular weight: Translated: 62492; Mature: 62492
Theoretical pI: Translated: 6.44; Mature: 6.44
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQTSAYYLQLAHINDCHSNFDPVALSLSVDHHGSQIRVACHSGGYGRIATILEQARDKAK CCCCEEEEEEEEEHHCCCCCCCEEEEEEECCCCCEEEEEEECCCCHHHHHHHHHHHHHHC RDNQAFLFLHGGDTFQGTLYFNEFKGRANAKLLNMLRPDAMVLGNHEIDSGNAPLHRFVE CCCCEEEEEECCCCEEEEEEEEECCCCCCHHHHHHHCCCEEEECCCCCCCCCCHHHHHHH AIDFPMLAGNMDLSGEDPTKAFPLARLPNLYYLDPSTGCARVIKHPLGDRELAIVGITLD HHCCCEEECCCCCCCCCCCCCCCHHHCCCEEEECCCCHHHHHHHCCCCCCCEEEEEEEHH QMSVIARPDPDTHFANTLETCKRTVKALKAEGIDHILVLSHLGLDGDRKLAASVDGISLI HEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHCCCCCCCEEEEECCCEEEE VGGHSHTLMGDFAELGLPAVPWGECVNGTAILHAGKYAETLGLADIGFNEKGLVTALNGG ECCCCCCHHHHHHHCCCCCCCCHHHCCCEEEEECCCHHHHCCCEECCCCCCCCEEEECCC NYLMLDEHLVIDGGDEMTRNAIIARLKAHPNILWPAQHPDVQQVIDTEFRPAIRALDHQV CEEEEECEEEEECCCHHHHHHHHHHHHCCCCEECCCCCCCHHHHHCCHHHHHHHHHHHHH LAMVPRELVHTRLPSKALPHGSEVAPWVSRAMYEESRILDGAVQFALHNAGGVRQSLSRG HHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCC QITLADVLGRLLPFELPLVKYAIEGQYLFEALESAINSATNNSVVGTGAGSFPYTFGLKY CEEHHHHHHHHCCCCCCHHHEEECHHHHHHHHHHHHHCCCCCCEEECCCCCCCEEEEEEE HYDGRRPMGERVLSLTVAQNNIWVPVKRQQVYVGVSSAYTASGKEGYDALACCHWQESID EECCCCCCCHHEEEEEEECCCEEEEEECCEEEEEECCCEECCCCCCCCHHEEEEHHHCCC GLTLPGAFIRFIQRHGEIADELAPQLSYVSHLG CEECCHHHHHHHHHHCHHHHHHHHHHHHHHHCC >Mature Secondary Structure MQTSAYYLQLAHINDCHSNFDPVALSLSVDHHGSQIRVACHSGGYGRIATILEQARDKAK CCCCEEEEEEEEEHHCCCCCCCEEEEEEECCCCCEEEEEEECCCCHHHHHHHHHHHHHHC RDNQAFLFLHGGDTFQGTLYFNEFKGRANAKLLNMLRPDAMVLGNHEIDSGNAPLHRFVE CCCCEEEEEECCCCEEEEEEEEECCCCCCHHHHHHHCCCEEEECCCCCCCCCCHHHHHHH AIDFPMLAGNMDLSGEDPTKAFPLARLPNLYYLDPSTGCARVIKHPLGDRELAIVGITLD HHCCCEEECCCCCCCCCCCCCCCHHHCCCEEEECCCCHHHHHHHCCCCCCCEEEEEEEHH QMSVIARPDPDTHFANTLETCKRTVKALKAEGIDHILVLSHLGLDGDRKLAASVDGISLI HEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHCCCCCCCEEEEECCCEEEE VGGHSHTLMGDFAELGLPAVPWGECVNGTAILHAGKYAETLGLADIGFNEKGLVTALNGG ECCCCCCHHHHHHHCCCCCCCCHHHCCCEEEEECCCHHHHCCCEECCCCCCCCEEEECCC NYLMLDEHLVIDGGDEMTRNAIIARLKAHPNILWPAQHPDVQQVIDTEFRPAIRALDHQV CEEEEECEEEEECCCHHHHHHHHHHHHCCCCEECCCCCCCHHHHHCCHHHHHHHHHHHHH LAMVPRELVHTRLPSKALPHGSEVAPWVSRAMYEESRILDGAVQFALHNAGGVRQSLSRG HHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCC QITLADVLGRLLPFELPLVKYAIEGQYLFEALESAINSATNNSVVGTGAGSFPYTFGLKY CEEHHHHHHHHCCCCCCHHHEEECHHHHHHHHHHHHHCCCCCCEEECCCCCCCEEEEEEE HYDGRRPMGERVLSLTVAQNNIWVPVKRQQVYVGVSSAYTASGKEGYDALACCHWQESID EECCCCCCCHHEEEEEEECCCEEEEEECCEEEEEECCCEECCCCCCCCHHEEEEHHHCCC GLTLPGAFIRFIQRHGEIADELAPQLSYVSHLG CEECCHHHHHHHHHHCHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9665876 [H]