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The map label for this gene is dcrA [H]

Identifier: 119775480

GI number: 119775480

Start: 2813492

End: 2815492

Strand: Direct

Name: dcrA [H]

Synonym: Sama_2345

Alternate gene names: 119775480

Gene position: 2813492-2815492 (Clockwise)

Preceding gene: 119775478

Following gene: 119775486

Centisome position: 65.34

GC content: 55.07

Gene sequence:

>2001_bases
ATGAACTATAAAGAATGGCCACTGGCCAAACAGATAGGCATTTTAGCAACTCTGCTTACCCTGGTGGTGTTTGCCCTGAT
GGGATTGATAGCCTACAAGTCGGCATCCAATGCTTTGCAGCAAAAAGGCACCCACGCCATGTCATCCAAGGCTGAAGCCG
TTACCGACATGCTGGCACTGCAGTACCGAAGCCTTGCCACCCTCGCCCACCGCAATGCCGATGTTCTCAGAGAAATGTAT
CCCGGCAGCTTTTATAAATCCGGCAACACAGTCAAAGTACTGGGGCAAGACACACCGGCGCTGATGCACGACAAAGAACA
AATCAACTCGACCAAGAGCAAGGTTGACCGCTATGCCAACCTCACCGGCGGCACCGCCACCGTGTTTGTGAAAGACGGCG
ACGACTTTTTACGGATTTCTACCTCACTCAAAAAGGCCGATGGCAGCCGGGCACTGGGGACTTATCTCGGTAAAACCCAC
CCGGCATACAATGTTTTGATGCAGGGTGGACAATATGAGGGCTACGCCAAACTCTTCGGTCACGACTATATGACTGTGTA
TCGGGCGGTTAAAAACCCGTCCGGAGAAGTGGTAGCCGTACTCTATATCGGCTTTGACATCGGCGACTCACTGACCCAGC
TGAAAGCCGCAGTAAGCCGCCTGAAGGTTGAAAAAACCGGCCACTTTATGTTGTTAAACCAAAAGGATGAGGTGGTATAC
GCCCAGGAGAGTCAGGCAGGCGAGCCCTTGAATGCCAGTATGCTCGAGGGTCTGTCGCCTTCAGACCTGCCAGTAGGTAG
CGGTGAAATGCAGTTTACCGACAATCAGGAACTGGAGAGATATCTAATCACCCGCGACATTCCCGGTTGGCACTGGCGCC
TGATAGCATCGGTCCCCATGGCTGAGCTCCATGAGGAGAGTGTGGCCCTGCTCAAGGTCAACACCCTGCTGTCGATAGGC
GCCATTCTGTTTATCACCCTGAGCCTGTCATGGGTGTTGCTGCGGGCACTTAAGCCCTTAACTGACTTGAAAACCCAGCT
TGAAGGTCTGGGTCGGGGTGAATTGGATCAACATTGGCAAACCAGCCCTGCCGATACCCACAACGAAGTGGACCATATTC
GCAACAGTGTTGCGACCATGGCGGGCAATCTGAAAACCCTGATTGAATCGCTGAAATCATCTGTCACCACACTGGGCACC
ATGGCCGAAGATGCCCGGCAAATCGCCGCGCAAAATGGCGATGAAGCCACAGCGCTGATGGCCCAAACCGACCAAATCGC
CACCGCCATCGAAGAAATGTCTACCTCTATACGCGATGTGGCTGAGCATTCCAGTGACGGGGCGCAGCAGAGCCAGAGCG
TGGACAGTGCCGCCAAAGAAGGTCAGAAACGGCTCGATGGTATGGTAGCGGACCTTGGCCGCCTCAGTGAGGTTTTGGCG
GCAAGCCACGATGCGGTTGAACAGGTTTCCAAAGAGAGTGAAGCTATCAGCCAGGTCACCGAAGTCATTAACAGCATTGC
CGAACAGACCAATTTGCTGGCGCTGAATGCCGCTATCGAAGCGGCCCGAGCCGGTGAGCAGGGCCGCGGCTTTGCGGTGG
TTGCCGATGAAGTCCGAACCCTCGCCAGCCGTACCCAAAGCTCTATTCAGGAAATCAGTAAAACCATTGGCAATCTTCAG
GATAAGGTGCGCAGCACCGCAGCCCAGATGAAAAAAGCCCATGAGCTTGGACAAAGCTGCGCCGAGCAGGGCAGTATCAC
GGGCGAGGAACTGGATACCATTACCGGCCGTATCGGAGATTTGGCCACAGTTTCTGCCAGCATTGCCAGCGCCACCCAGC
AGCAGAGCACTGTCGCCGAAGACATTACCCGCAATCTGCACCTGATAAGTGACCTTGCCCGGGAAGGAGAGTTCCGGGCT
GGCGCCACGGTGGACAGCGCCAATCAGCTCAGGGATTTGGCGCGGGATCTGACCGCGCGGATTGGGGTGTTCAGAACCTG
A

Upstream 100 bases:

>100_bases
AAATTAACAAAAGGTAAATTCAGAGTTGGAGCTTGGTCAATTTTTCGTACGCCGTGCCGATGTACATTAGTCACACCCTG
CGAGTCTGTAAGGAAAAACA

Downstream 100 bases:

>100_bases
TCCTCACCCGCAATAAAAAAGCCGCCAAAAGGCGGCTTTTTTATTTCTCGCTGAATACCCGGTACATTGCCACGTGAGCT
ATCAGTCATGAGTTTCATTT

Product: putative methyl-accepting chemotaxis sensory transducer

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 666; Mature: 666

Protein sequence:

>666_residues
MNYKEWPLAKQIGILATLLTLVVFALMGLIAYKSASNALQQKGTHAMSSKAEAVTDMLALQYRSLATLAHRNADVLREMY
PGSFYKSGNTVKVLGQDTPALMHDKEQINSTKSKVDRYANLTGGTATVFVKDGDDFLRISTSLKKADGSRALGTYLGKTH
PAYNVLMQGGQYEGYAKLFGHDYMTVYRAVKNPSGEVVAVLYIGFDIGDSLTQLKAAVSRLKVEKTGHFMLLNQKDEVVY
AQESQAGEPLNASMLEGLSPSDLPVGSGEMQFTDNQELERYLITRDIPGWHWRLIASVPMAELHEESVALLKVNTLLSIG
AILFITLSLSWVLLRALKPLTDLKTQLEGLGRGELDQHWQTSPADTHNEVDHIRNSVATMAGNLKTLIESLKSSVTTLGT
MAEDARQIAAQNGDEATALMAQTDQIATAIEEMSTSIRDVAEHSSDGAQQSQSVDSAAKEGQKRLDGMVADLGRLSEVLA
ASHDAVEQVSKESEAISQVTEVINSIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLASRTQSSIQEISKTIGNLQ
DKVRSTAAQMKKAHELGQSCAEQGSITGEELDTITGRIGDLATVSASIASATQQQSTVAEDITRNLHLISDLAREGEFRA
GATVDSANQLRDLARDLTARIGVFRT

Sequences:

>Translated_666_residues
MNYKEWPLAKQIGILATLLTLVVFALMGLIAYKSASNALQQKGTHAMSSKAEAVTDMLALQYRSLATLAHRNADVLREMY
PGSFYKSGNTVKVLGQDTPALMHDKEQINSTKSKVDRYANLTGGTATVFVKDGDDFLRISTSLKKADGSRALGTYLGKTH
PAYNVLMQGGQYEGYAKLFGHDYMTVYRAVKNPSGEVVAVLYIGFDIGDSLTQLKAAVSRLKVEKTGHFMLLNQKDEVVY
AQESQAGEPLNASMLEGLSPSDLPVGSGEMQFTDNQELERYLITRDIPGWHWRLIASVPMAELHEESVALLKVNTLLSIG
AILFITLSLSWVLLRALKPLTDLKTQLEGLGRGELDQHWQTSPADTHNEVDHIRNSVATMAGNLKTLIESLKSSVTTLGT
MAEDARQIAAQNGDEATALMAQTDQIATAIEEMSTSIRDVAEHSSDGAQQSQSVDSAAKEGQKRLDGMVADLGRLSEVLA
ASHDAVEQVSKESEAISQVTEVINSIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLASRTQSSIQEISKTIGNLQ
DKVRSTAAQMKKAHELGQSCAEQGSITGEELDTITGRIGDLATVSASIASATQQQSTVAEDITRNLHLISDLAREGEFRA
GATVDSANQLRDLARDLTARIGVFRT
>Mature_666_residues
MNYKEWPLAKQIGILATLLTLVVFALMGLIAYKSASNALQQKGTHAMSSKAEAVTDMLALQYRSLATLAHRNADVLREMY
PGSFYKSGNTVKVLGQDTPALMHDKEQINSTKSKVDRYANLTGGTATVFVKDGDDFLRISTSLKKADGSRALGTYLGKTH
PAYNVLMQGGQYEGYAKLFGHDYMTVYRAVKNPSGEVVAVLYIGFDIGDSLTQLKAAVSRLKVEKTGHFMLLNQKDEVVY
AQESQAGEPLNASMLEGLSPSDLPVGSGEMQFTDNQELERYLITRDIPGWHWRLIASVPMAELHEESVALLKVNTLLSIG
AILFITLSLSWVLLRALKPLTDLKTQLEGLGRGELDQHWQTSPADTHNEVDHIRNSVATMAGNLKTLIESLKSSVTTLGT
MAEDARQIAAQNGDEATALMAQTDQIATAIEEMSTSIRDVAEHSSDGAQQSQSVDSAAKEGQKRLDGMVADLGRLSEVLA
ASHDAVEQVSKESEAISQVTEVINSIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLASRTQSSIQEISKTIGNLQ
DKVRSTAAQMKKAHELGQSCAEQGSITGEELDTITGRIGDLATVSASIASATQQQSTVAEDITRNLHLISDLAREGEFRA
GATVDSANQLRDLARDLTARIGVFRT

Specific function: Mediates Taxis To The Sugars Ribose And Galactose VIa An Interaction With The Periplasmic Ribose- Or Galactose-Binding Proteins. Chemotactic-Signal Transducers Respond To Changes In The Concentration Of Attractants And Repellents In The Environment, Trans

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein; Periplasmic side (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI1787690, Length=368, Percent_Identity=30.4347826086957, Blast_Score=119, Evalue=9e-28,
Organism=Escherichia coli, GI1788195, Length=297, Percent_Identity=30.976430976431, Blast_Score=106, Evalue=5e-24,
Organism=Escherichia coli, GI1788194, Length=356, Percent_Identity=25.561797752809, Blast_Score=100, Evalue=5e-22,
Organism=Escherichia coli, GI2367378, Length=309, Percent_Identity=28.1553398058252, Blast_Score=99, Evalue=6e-22,
Organism=Escherichia coli, GI1789453, Length=335, Percent_Identity=26.5671641791045, Blast_Score=96, Evalue=1e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004090
- InterPro:   IPR004089
- InterPro:   IPR003660
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013767 [H]

Pfam domain/function: PF00672 HAMP; PF00015 MCPsignal; PF00989 PAS [H]

EC number: NA

Molecular weight: Translated: 71941; Mature: 71941

Theoretical pI: Translated: 5.23; Mature: 5.23

Prosite motif: PS50885 HAMP ; PS50111 CHEMOTAXIS_TRANSDUC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNYKEWPLAKQIGILATLLTLVVFALMGLIAYKSASNALQQKGTHAMSSKAEAVTDMLAL
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
QYRSLATLAHRNADVLREMYPGSFYKSGNTVKVLGQDTPALMHDKEQINSTKSKVDRYAN
HHHHHHHHHHCCHHHHHHHCCCCEECCCCEEEEECCCCCHHHCCHHHHHHHHHHHHHHHC
LTGGTATVFVKDGDDFLRISTSLKKADGSRALGTYLGKTHPAYNVLMQGGQYEGYAKLFG
CCCCEEEEEEECCCCHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHCCCCCCCHHHHHH
HDYMTVYRAVKNPSGEVVAVLYIGFDIGDSLTQLKAAVSRLKVEKTGHFMLLNQKDEVVY
HHHHHHHHHHCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCEEE
AQESQAGEPLNASMLEGLSPSDLPVGSGEMQFTDNQELERYLITRDIPGWHWRLIASVPM
ECCCCCCCCCCHHHHCCCCCCCCCCCCCCCEECCHHHHHHHHHHCCCCCHHHHHHHHCCH
AELHEESVALLKVNTLLSIGAILFITLSLSWVLLRALKPLTDLKTQLEGLGRGELDQHWQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
TSPADTHNEVDHIRNSVATMAGNLKTLIESLKSSVTTLGTMAEDARQIAAQNGDEATALM
CCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
AQTDQIATAIEEMSTSIRDVAEHSSDGAQQSQSVDSAAKEGQKRLDGMVADLGRLSEVLA
HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ASHDAVEQVSKESEAISQVTEVINSIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEHHHHHHHHHHCCCCCCCEEEEHHHHHH
LASRTQSSIQEISKTIGNLQDKVRSTAAQMKKAHELGQSCAEQGSITGEELDTITGRIGD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCC
LATVSASIASATQQQSTVAEDITRNLHLISDLAREGEFRAGATVDSANQLRDLARDLTAR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHH
IGVFRT
HCCCCC
>Mature Secondary Structure
MNYKEWPLAKQIGILATLLTLVVFALMGLIAYKSASNALQQKGTHAMSSKAEAVTDMLAL
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
QYRSLATLAHRNADVLREMYPGSFYKSGNTVKVLGQDTPALMHDKEQINSTKSKVDRYAN
HHHHHHHHHHCCHHHHHHHCCCCEECCCCEEEEECCCCCHHHCCHHHHHHHHHHHHHHHC
LTGGTATVFVKDGDDFLRISTSLKKADGSRALGTYLGKTHPAYNVLMQGGQYEGYAKLFG
CCCCEEEEEEECCCCHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHCCCCCCCHHHHHH
HDYMTVYRAVKNPSGEVVAVLYIGFDIGDSLTQLKAAVSRLKVEKTGHFMLLNQKDEVVY
HHHHHHHHHHCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCEEE
AQESQAGEPLNASMLEGLSPSDLPVGSGEMQFTDNQELERYLITRDIPGWHWRLIASVPM
ECCCCCCCCCCHHHHCCCCCCCCCCCCCCCEECCHHHHHHHHHHCCCCCHHHHHHHHCCH
AELHEESVALLKVNTLLSIGAILFITLSLSWVLLRALKPLTDLKTQLEGLGRGELDQHWQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
TSPADTHNEVDHIRNSVATMAGNLKTLIESLKSSVTTLGTMAEDARQIAAQNGDEATALM
CCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
AQTDQIATAIEEMSTSIRDVAEHSSDGAQQSQSVDSAAKEGQKRLDGMVADLGRLSEVLA
HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ASHDAVEQVSKESEAISQVTEVINSIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEHHHHHHHHHHCCCCCCCEEEEHHHHHH
LASRTQSSIQEISKTIGNLQDKVRSTAAQMKKAHELGQSCAEQGSITGEELDTITGRIGD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCC
LATVSASIASATQQQSTVAEDITRNLHLISDLAREGEFRAGATVDSANQLRDLARDLTAR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHH
IGVFRT
HCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1548224 [H]