| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119775468
Identifier: 119775468
GI number: 119775468
Start: 2799182
End: 2800171
Strand: Direct
Name: 119775468
Synonym: Sama_2333
Alternate gene names: NA
Gene position: 2799182-2800171 (Clockwise)
Preceding gene: 119775467
Following gene: 119775469
Centisome position: 65.0
GC content: 38.79
Gene sequence:
>990_bases ATGACCTCACTATTGGCTGATAAACTCCCGATTGGTGGTGAGCAAGAAATAGCTTTTGATGGCCTATATTATGGGACTAC AAACAGTGGACGCTCGTCGCTTCGTTGGGCATTGCACTCTATGGATCTATACGCCAAGCGAATACTGGTTCCTGATTTTG TGTGCCAAGTGGTTATTGATGTTTTGCTGGAGTTCTCTATACAACCTGTGTTTTATGAGGTCGGGCTGGATTTAGACTTC AAGTTACCTACAGATGCAAAAAATTGTGACGCGCTATATTTAGTTAAATACTTTGGCCACAGTTCAAAATCTTTTAGCAT AGCGCTAGAGCAGTCGAATATTCCATTGATAATTGACACAGTGTTCGATGCTGAACTACCAACTGTAAAAACAAATAGCC ACTGGTGTGCATTTAACAGCCTAAGAAAAATATCCAGGATTGCTGACTACAGCCAACTAGCCTCAAACAAACCACTTATT CCAATCGAACGCACCAGATTGGAAACTTTTTCCAGGTTGAAGTATCAAGCTAAAAATATAAAACATCAGTTTTTAACTAA AAAAATTGAAAGCGAAGAACGTTACTTGAATCTATTTTCAGATGCTGAATCCATCCTTGATGATAGCAAGGGAGTCTATT ATCCGGAAGATAATAGTATATTTTTATCAAACATTTTTCACCACAACCTTTCAGCTGAAACAGAGCTAAGACGTTCTAAT TTGGAGATAGCAAAAGCAACCCTTAGCGATGTCACATATATAGACATCAACCCTTGCTTACCGAGTTTCCTGCCAATACT TTTAAAAGATAGAGATAGGGTTAGAGAAAAACTAAAGAAAAACCATATGTACCTAGCTATTCATTGGCCATCGCTATCTA CTCTGGGCAATAAGCTATCACCTAACATACTCTCTATACCATTAGACTCCAGATATCAGATGTCTGATATACAGCGGATG TGCCAAATTATAGCCAAGGAGGCACTGTGA
Upstream 100 bases:
>100_bases AAAGAAACTGTAAACCCATATGGAAAGGGTGATAGCGTCCAAAAAGTGATTGCTGTGTTGAAATCTGTTGACTTAGATAG CTTAAAGAGAAAGCCATTTT
Downstream 100 bases:
>100_bases ACATTCGACTAAAACAGGCAGAGATAAAAGATTTTGATGGTTTCTTAGCGATACGTTCGGAAGCAAAAAATGTTTATTGG TCTGGTTTTAGCGCCGCGCC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 329; Mature: 328
Protein sequence:
>329_residues MTSLLADKLPIGGEQEIAFDGLYYGTTNSGRSSLRWALHSMDLYAKRILVPDFVCQVVIDVLLEFSIQPVFYEVGLDLDF KLPTDAKNCDALYLVKYFGHSSKSFSIALEQSNIPLIIDTVFDAELPTVKTNSHWCAFNSLRKISRIADYSQLASNKPLI PIERTRLETFSRLKYQAKNIKHQFLTKKIESEERYLNLFSDAESILDDSKGVYYPEDNSIFLSNIFHHNLSAETELRRSN LEIAKATLSDVTYIDINPCLPSFLPILLKDRDRVREKLKKNHMYLAIHWPSLSTLGNKLSPNILSIPLDSRYQMSDIQRM CQIIAKEAL
Sequences:
>Translated_329_residues MTSLLADKLPIGGEQEIAFDGLYYGTTNSGRSSLRWALHSMDLYAKRILVPDFVCQVVIDVLLEFSIQPVFYEVGLDLDF KLPTDAKNCDALYLVKYFGHSSKSFSIALEQSNIPLIIDTVFDAELPTVKTNSHWCAFNSLRKISRIADYSQLASNKPLI PIERTRLETFSRLKYQAKNIKHQFLTKKIESEERYLNLFSDAESILDDSKGVYYPEDNSIFLSNIFHHNLSAETELRRSN LEIAKATLSDVTYIDINPCLPSFLPILLKDRDRVREKLKKNHMYLAIHWPSLSTLGNKLSPNILSIPLDSRYQMSDIQRM CQIIAKEAL >Mature_328_residues TSLLADKLPIGGEQEIAFDGLYYGTTNSGRSSLRWALHSMDLYAKRILVPDFVCQVVIDVLLEFSIQPVFYEVGLDLDFK LPTDAKNCDALYLVKYFGHSSKSFSIALEQSNIPLIIDTVFDAELPTVKTNSHWCAFNSLRKISRIADYSQLASNKPLIP IERTRLETFSRLKYQAKNIKHQFLTKKIESEERYLNLFSDAESILDDSKGVYYPEDNSIFLSNIFHHNLSAETELRRSNL EIAKATLSDVTYIDINPCLPSFLPILLKDRDRVREKLKKNHMYLAIHWPSLSTLGNKLSPNILSIPLDSRYQMSDIQRMC QIIAKEAL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 37666; Mature: 37535
Theoretical pI: Translated: 6.94; Mature: 6.94
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTSLLADKLPIGGEQEIAFDGLYYGTTNSGRSSLRWALHSMDLYAKRILVPDFVCQVVID CCCCCCCCCCCCCCCCEEECCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VLLEFSIQPVFYEVGLDLDFKLPTDAKNCDALYLVKYFGHSSKSFSIALEQSNIPLIIDT HHHHHCCCEEEEEECCCEEEECCCCCCCCCEEEEEEECCCCCCEEEEEEECCCCCEEEEE VFDAELPTVKTNSHWCAFNSLRKISRIADYSQLASNKPLIPIERTRLETFSRLKYQAKNI EECCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH KHQFLTKKIESEERYLNLFSDAESILDDSKGVYYPEDNSIFLSNIFHHNLSAETELRRSN HHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCEEECCCCCEEEEHHHHCCCCCHHHHHHHC LEIAKATLSDVTYIDINPCLPSFLPILLKDRDRVREKLKKNHMYLAIHWPSLSTLGNKLS HHHHHHHHCCEEEEEECCCHHHHHHHHHCCHHHHHHHHHHCCEEEEEECCCHHHHCCCCC PNILSIPLDSRYQMSDIQRMCQIIAKEAL CCEEEECCCCCCCHHHHHHHHHHHHHHCC >Mature Secondary Structure TSLLADKLPIGGEQEIAFDGLYYGTTNSGRSSLRWALHSMDLYAKRILVPDFVCQVVID CCCCCCCCCCCCCCCEEECCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VLLEFSIQPVFYEVGLDLDFKLPTDAKNCDALYLVKYFGHSSKSFSIALEQSNIPLIIDT HHHHHCCCEEEEEECCCEEEECCCCCCCCCEEEEEEECCCCCCEEEEEEECCCCCEEEEE VFDAELPTVKTNSHWCAFNSLRKISRIADYSQLASNKPLIPIERTRLETFSRLKYQAKNI EECCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH KHQFLTKKIESEERYLNLFSDAESILDDSKGVYYPEDNSIFLSNIFHHNLSAETELRRSN HHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCEEECCCCCEEEEHHHHCCCCCHHHHHHHC LEIAKATLSDVTYIDINPCLPSFLPILLKDRDRVREKLKKNHMYLAIHWPSLSTLGNKLS HHHHHHHHCCEEEEEECCCHHHHHHHHHCCHHHHHHHHHHCCEEEEEECCCHHHHCCCCC PNILSIPLDSRYQMSDIQRMCQIIAKEAL CCEEEECCCCCCCHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA