| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119775457
Identifier: 119775457
GI number: 119775457
Start: 2786900
End: 2787235
Strand: Direct
Name: 119775457
Synonym: Sama_2322
Alternate gene names: NA
Gene position: 2786900-2787235 (Clockwise)
Preceding gene: 119775456
Following gene: 119775458
Centisome position: 64.72
GC content: 54.76
Gene sequence:
>336_bases ATGGCCATCGAATTACCCAAAAACAATGCCGCGTCCAACCGCGTCGGCAACACCAGCAGTCCACTGACCAGTGCCCGCAC TGCCCAGGCATCGGCAGCTCAAACCGCGCAGCCACAGGTACCTCAAAAGGCCGACTCGGTGATGATCACCAGTCAGGCTC AGCAATTGCAAAGCGTGCAGTCAAAGCTGTCTTCTCTGCCTGAAGTTGACCAAAAGAAAGTGGCCGAAATCAAGCAAGCC ATAGCGGAAGGGCGTTATAAAATTGACCCTGAGAAGCTCGCGGCCAATATCGCCAGCTTTGAAGCAGAATTACAGGAATT GGGCCGCGACGCCTGA
Upstream 100 bases:
>100_bases TTGGCGAAGTGGAAGTCAAAATGTAAAATACCCTAAAGCTTTGCTGGCTGCGGCCGATAATAATCACAAGAAACCCAAAT CCGTGACACTGGAGCCCGAA
Downstream 100 bases:
>100_bases TTTTCAGCACGGATTGGGAAACATCCAAAGCCGGCCATTTGATTATGGCCGGCTTTTTGCATTCATTTATTACTACCCCT GATGTCAATAAAACCGGGAT
Product: putative anti-sigma-28 factor, FlgM
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 111; Mature: 110
Protein sequence:
>111_residues MAIELPKNNAASNRVGNTSSPLTSARTAQASAAQTAQPQVPQKADSVMITSQAQQLQSVQSKLSSLPEVDQKKVAEIKQA IAEGRYKIDPEKLAANIASFEAELQELGRDA
Sequences:
>Translated_111_residues MAIELPKNNAASNRVGNTSSPLTSARTAQASAAQTAQPQVPQKADSVMITSQAQQLQSVQSKLSSLPEVDQKKVAEIKQA IAEGRYKIDPEKLAANIASFEAELQELGRDA >Mature_110_residues AIELPKNNAASNRVGNTSSPLTSARTAQASAAQTAQPQVPQKADSVMITSQAQQLQSVQSKLSSLPEVDQKKVAEIKQAI AEGRYKIDPEKLAANIASFEAELQELGRDA
Specific function: Unknown
COG id: COG2747
COG function: function code KNU; Negative regulator of flagellin synthesis (anti-sigma28 factor)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 11804; Mature: 11673
Theoretical pI: Translated: 6.84; Mature: 6.84
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 0.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAIELPKNNAASNRVGNTSSPLTSARTAQASAAQTAQPQVPQKADSVMITSQAQQLQSVQ CEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH SKLSSLPEVDQKKVAEIKQAIAEGRYKIDPEKLAANIASFEAELQELGRDA HHHHCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure AIELPKNNAASNRVGNTSSPLTSARTAQASAAQTAQPQVPQKADSVMITSQAQQLQSVQ EECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH SKLSSLPEVDQKKVAEIKQAIAEGRYKIDPEKLAANIASFEAELQELGRDA HHHHCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA