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The map label for this gene is flgD [H]

Identifier: 119775451

GI number: 119775451

Start: 2782289

End: 2783017

Strand: Reverse

Name: flgD [H]

Synonym: Sama_2316

Alternate gene names: 119775451

Gene position: 2783017-2782289 (Counterclockwise)

Preceding gene: 119775452

Following gene: 119775450

Centisome position: 64.63

GC content: 53.91

Gene sequence:

>729_bases
GTGAGTTTTCTTAACTCTATCAGTCAGGCATCGGCGGCCCAGTCAACCCAGAGCACGGGAAATCCCTTTCTGGACAGTGT
CAGGTTGCAGACCAAAGAGGCAGTGCCAGAGGCTAAAAAGCAGGAATTGACTCAAGAGGATTTTTTCGCCCTCTTGTCGC
AGCAGTTGTCGATGCAGGATCCGTTCAAGCCGGTGGAAAACGACCAGATGATTGCCCAGATGGCGTCATTCTCTACCGTG
GACGGTATCGCCAATCTGAACGATCACATTGTGAATCTGAATACCGTGATGACCTCCAGCCAGGCACTGCAGGCATCAGG
GCTGGTTGGGCAGAAGGTATTGATCCCATCGGCGTCTGGCCATGTATCTGCTGAAGAGCCCAACCTAAAGGGTGTCATCA
GCACCTCCAAGCCCATCGAGACAATCATGGTGCGCATTGAAGATGACAAGGGGCAGTTGGTGAAAACCTTCAGTGTGGAT
GGCAGTGACGGCGGCAACATCGATGTGAATTGGGATGGCCTCGATGCGGAAGGCAAGCCCGTTGCCGATGGTACTTACAC
CATCAAGGCCAGTGGCCGGGTCGATGGCAAGGCCGAGGAATTACCGGTTTCAACTTATGCCCACGTGACCAGCGTGTCGC
TTGGGACAGCAGCAACAGGCGCCATTCTGAATTTGCGTGGCATTGGCGGCATTAAACTATCGGATGTTCTGGCTGTGGCT
GAGAGCTGA

Upstream 100 bases:

>100_bases
CGTATCAAATGAATGTCCAGGTGGCCGATACCGCCAAGAGTATGCTGATGCAGACTTTGAGAATGGGCAAATAACGGATG
TGGCGCTAAGGAGGTAAGCC

Downstream 100 bases:

>100_bases
TCCAGAAAACCAGACTAAAGAGGTAACTGACTTATGTCTTTCAATATCGCACTCAGTGGCATTGCTGCCGCCCAGAAAGA
TTTGAACACCACAGCCAACA

Product: flagellar basal body rod modification protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 242; Mature: 241

Protein sequence:

>242_residues
MSFLNSISQASAAQSTQSTGNPFLDSVRLQTKEAVPEAKKQELTQEDFFALLSQQLSMQDPFKPVENDQMIAQMASFSTV
DGIANLNDHIVNLNTVMTSSQALQASGLVGQKVLIPSASGHVSAEEPNLKGVISTSKPIETIMVRIEDDKGQLVKTFSVD
GSDGGNIDVNWDGLDAEGKPVADGTYTIKASGRVDGKAEELPVSTYAHVTSVSLGTAATGAILNLRGIGGIKLSDVLAVA
ES

Sequences:

>Translated_242_residues
MSFLNSISQASAAQSTQSTGNPFLDSVRLQTKEAVPEAKKQELTQEDFFALLSQQLSMQDPFKPVENDQMIAQMASFSTV
DGIANLNDHIVNLNTVMTSSQALQASGLVGQKVLIPSASGHVSAEEPNLKGVISTSKPIETIMVRIEDDKGQLVKTFSVD
GSDGGNIDVNWDGLDAEGKPVADGTYTIKASGRVDGKAEELPVSTYAHVTSVSLGTAATGAILNLRGIGGIKLSDVLAVA
ES
>Mature_241_residues
SFLNSISQASAAQSTQSTGNPFLDSVRLQTKEAVPEAKKQELTQEDFFALLSQQLSMQDPFKPVENDQMIAQMASFSTVD
GIANLNDHIVNLNTVMTSSQALQASGLVGQKVLIPSASGHVSAEEPNLKGVISTSKPIETIMVRIEDDKGQLVKTFSVDG
SDGGNIDVNWDGLDAEGKPVADGTYTIKASGRVDGKAEELPVSTYAHVTSVSLGTAATGAILNLRGIGGIKLSDVLAVAE
S

Specific function: Required for flagellar hook formation. May act as a scaffolding protein [H]

COG id: COG1843

COG function: function code N; Flagellar hook capping protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the flgD family [H]

Homologues:

Organism=Escherichia coli, GI1787315, Length=155, Percent_Identity=32.258064516129, Blast_Score=84, Evalue=6e-18,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005648 [H]

Pfam domain/function: PF03963 FlgD [H]

EC number: NA

Molecular weight: Translated: 25409; Mature: 25278

Theoretical pI: Translated: 4.35; Mature: 4.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFLNSISQASAAQSTQSTGNPFLDSVRLQTKEAVPEAKKQELTQEDFFALLSQQLSMQD
CCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHCCCC
PFKPVENDQMIAQMASFSTVDGIANLNDHIVNLNTVMTSSQALQASGLVGQKVLIPSASG
CCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEHHHHCCCHHHHHCCCCCCEEEEECCCC
HVSAEEPNLKGVISTSKPIETIMVRIEDDKGQLVKTFSVDGSDGGNIDVNWDGLDAEGKP
CCCCCCCCCCEEEECCCCCEEEEEEEECCCCCEEEEEECCCCCCCEEEEEECCCCCCCCC
VADGTYTIKASGRVDGKAEELPVSTYAHVTSVSLGTAATGAILNLRGIGGIKLSDVLAVA
CCCCEEEEEECCCCCCCHHHCCCHHHHHEEEEECCCCCCCEEEEECCCCCCCHHHHEEEC
ES
CC
>Mature Secondary Structure 
SFLNSISQASAAQSTQSTGNPFLDSVRLQTKEAVPEAKKQELTQEDFFALLSQQLSMQD
CHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHCCCC
PFKPVENDQMIAQMASFSTVDGIANLNDHIVNLNTVMTSSQALQASGLVGQKVLIPSASG
CCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEHHHHCCCHHHHHCCCCCCEEEEECCCC
HVSAEEPNLKGVISTSKPIETIMVRIEDDKGQLVKTFSVDGSDGGNIDVNWDGLDAEGKP
CCCCCCCCCCEEEECCCCCEEEEEEEECCCCCEEEEEECCCCCCCEEEEEECCCCCCCCC
VADGTYTIKASGRVDGKAEELPVSTYAHVTSVSLGTAATGAILNLRGIGGIKLSDVLAVA
CCCCEEEEEECCCCCCCHHHCCCHHHHHEEEEECCCCCCCEEEEECCCCCCCHHHHEEEC
ES
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]