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The map label for this gene is degT [H]

Identifier: 119775392

GI number: 119775392

Start: 2720598

End: 2721671

Strand: Reverse

Name: degT [H]

Synonym: Sama_2257

Alternate gene names: 119775392

Gene position: 2721671-2720598 (Counterclockwise)

Preceding gene: 119775393

Following gene: 119775391

Centisome position: 63.2

GC content: 40.97

Gene sequence:

>1074_bases
ATGCAGTTTATTGATTTGGCCGCGCAATATAAGCATCTGAAAGAAAAAATTGATGCACGTATTCAAGCTGTGTTGGAACA
TGGTCACTATATAATGGGACCAGAGGTTGCTGAACTAGAAGACAAATTGGCCGAATATGTAGGTGTAAAGCACGCTATTA
CATGTGCGAATGGCACTGATGCACTCACTCTTGTCATGATGGCGTTAGGTATAAAAGAAGGCGACGCGGTGTTTTGCCCA
ACTTTTACCTTTTTCGCAACTGCAGAGGTCATTGCATATGAAGGGGCGACTCCTGTATTTGTGGATTCAGATGCGGATAC
ATTTAATATTTGTCCCCTCGATCTAGAAAAGCAAATTCAAAAAGTGATTGCGGAAGGGAAACTTAAACCGGCAGCTATCA
TTGCAGTAGATTTATTTGGTCTTCCTGCCAACTATCCAGAACTTGAAAAAATAGCCAAGCAATATGGACTTAAGCTTGTA
GAAGACGCCGCTCAAGGTTTCGGTGGTGAAATTGAAGATAAGCGAGCGGGCTCTTTTGGTGATATTGCAACAACCAGTTT
TTTTCCAGCAAAACCATTAGGTTGTTACGGGGATGGAGGGGCAATATTCACTAATGATGACCACTATGCTGAGCTAATTA
GATCGCTGCGTGTTCATGGCAAAGGTAAGGACAAATATGACAATATACGTGTGGGAATGAATAGTCGCTTAGATACTTTA
CAAGCAGCAGTACTACTTGAAAAATTAGCCGCTTTTCCGCAAGAGCTGATTAGTAGAAATAAAGCTGCAAAAAGGTACTC
AAGAGAGCTAAGCTCAATCTATAAAACACCTGTAACACCAGTAGGATATTTAAGTTCTTGGGCGCAATATACTGTTGTAG
CCGAAGATAGAAATGCTGAGATAGAAATGTACAAGAGCAAGGGGATTCCTACCATGATTTATTATGGCACTTGTATGCAC
CAGCAAACTGCATTCGAAGCCTTAGGATATCAGGATTCAGATTTTCCCGTCGCAAGCAGATTAGCTAAAACTGTATTTAG
CTTACCAATGCATGGTTACATGATGGATAAATAG

Upstream 100 bases:

>100_bases
GCCACTACAGGGTGATGGTGAGGCGACATGCCCACATACTGGCGATATATACGTATTGCGCGACGGGCTCGTCGAGTTGA
TATCTAAGTAAGGAATGTAC

Downstream 100 bases:

>100_bases
AATGAAAATAGCACATGTGTACATTGGTAACTCAATTAAACATCCAATAATCAAGACTTATATAGATTTTTCGGCAGAAA
TAGGTGTAACCGAATTAGAG

Product: DegT/DnrJ/EryC1/StrS family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 357; Mature: 357

Protein sequence:

>357_residues
MQFIDLAAQYKHLKEKIDARIQAVLEHGHYIMGPEVAELEDKLAEYVGVKHAITCANGTDALTLVMMALGIKEGDAVFCP
TFTFFATAEVIAYEGATPVFVDSDADTFNICPLDLEKQIQKVIAEGKLKPAAIIAVDLFGLPANYPELEKIAKQYGLKLV
EDAAQGFGGEIEDKRAGSFGDIATTSFFPAKPLGCYGDGGAIFTNDDHYAELIRSLRVHGKGKDKYDNIRVGMNSRLDTL
QAAVLLEKLAAFPQELISRNKAAKRYSRELSSIYKTPVTPVGYLSSWAQYTVVAEDRNAEIEMYKSKGIPTMIYYGTCMH
QQTAFEALGYQDSDFPVASRLAKTVFSLPMHGYMMDK

Sequences:

>Translated_357_residues
MQFIDLAAQYKHLKEKIDARIQAVLEHGHYIMGPEVAELEDKLAEYVGVKHAITCANGTDALTLVMMALGIKEGDAVFCP
TFTFFATAEVIAYEGATPVFVDSDADTFNICPLDLEKQIQKVIAEGKLKPAAIIAVDLFGLPANYPELEKIAKQYGLKLV
EDAAQGFGGEIEDKRAGSFGDIATTSFFPAKPLGCYGDGGAIFTNDDHYAELIRSLRVHGKGKDKYDNIRVGMNSRLDTL
QAAVLLEKLAAFPQELISRNKAAKRYSRELSSIYKTPVTPVGYLSSWAQYTVVAEDRNAEIEMYKSKGIPTMIYYGTCMH
QQTAFEALGYQDSDFPVASRLAKTVFSLPMHGYMMDK
>Mature_357_residues
MQFIDLAAQYKHLKEKIDARIQAVLEHGHYIMGPEVAELEDKLAEYVGVKHAITCANGTDALTLVMMALGIKEGDAVFCP
TFTFFATAEVIAYEGATPVFVDSDADTFNICPLDLEKQIQKVIAEGKLKPAAIIAVDLFGLPANYPELEKIAKQYGLKLV
EDAAQGFGGEIEDKRAGSFGDIATTSFFPAKPLGCYGDGGAIFTNDDHYAELIRSLRVHGKGKDKYDNIRVGMNSRLDTL
QAAVLLEKLAAFPQELISRNKAAKRYSRELSSIYKTPVTPVGYLSSWAQYTVVAEDRNAEIEMYKSKGIPTMIYYGTCMH
QQTAFEALGYQDSDFPVASRLAKTVFSLPMHGYMMDK

Specific function: This membrane protein may function as a sensor protein and may transfer the signal of environmental stimuli to the regulatory region of target genes to activate or repress transcription of the genes [H]

COG id: COG0399

COG function: function code M; Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the degT/dnrJ/eryC1 family [H]

Homologues:

Organism=Escherichia coli, GI145693159, Length=354, Percent_Identity=27.4011299435028, Blast_Score=129, Evalue=3e-31,
Organism=Escherichia coli, GI2367285, Length=324, Percent_Identity=26.8518518518519, Blast_Score=92, Evalue=7e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000653
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF01041 DegT_DnrJ_EryC1 [H]

EC number: NA

Molecular weight: Translated: 39364; Mature: 39364

Theoretical pI: Translated: 5.27; Mature: 5.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQFIDLAAQYKHLKEKIDARIQAVLEHGHYIMGPEVAELEDKLAEYVGVKHAITCANGTD
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCHHHHHHHHHHHHCCHHEEEECCCCH
ALTLVMMALGIKEGDAVFCPTFTFFATAEVIAYEGATPVFVDSDADTFNICPLDLEKQIQ
HHHHHHHHHCCCCCCEEECCCHHHHHHHHHHEECCCCCEEECCCCCEEEECCCCHHHHHH
KVIAEGKLKPAAIIAVDLFGLPANYPELEKIAKQYGLKLVEDAAQGFGGEIEDKRAGSFG
HHHHHCCCCCCEEEEEEEECCCCCCHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCCCCC
DIATTSFFPAKPLGCYGDGGAIFTNDDHYAELIRSLRVHGKGKDKYDNIRVGMNSRLDTL
CCCCCCCCCCCCCCEECCCCEEEECCHHHHHHHHHHHHCCCCCCCCCCEEECCCCHHHHH
QAAVLLEKLAAFPQELISRNKAAKRYSRELSSIYKTPVTPVGYLSSWAQYTVVAEDRNAE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCEEEEEECCCCCE
IEMYKSKGIPTMIYYGTCMHQQTAFEALGYQDSDFPVASRLAKTVFSLPMHGYMMDK
EEEEECCCCCEEEEEEHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCEECCC
>Mature Secondary Structure
MQFIDLAAQYKHLKEKIDARIQAVLEHGHYIMGPEVAELEDKLAEYVGVKHAITCANGTD
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCHHHHHHHHHHHHCCHHEEEECCCCH
ALTLVMMALGIKEGDAVFCPTFTFFATAEVIAYEGATPVFVDSDADTFNICPLDLEKQIQ
HHHHHHHHHCCCCCCEEECCCHHHHHHHHHHEECCCCCEEECCCCCEEEECCCCHHHHHH
KVIAEGKLKPAAIIAVDLFGLPANYPELEKIAKQYGLKLVEDAAQGFGGEIEDKRAGSFG
HHHHHCCCCCCEEEEEEEECCCCCCHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCCCCC
DIATTSFFPAKPLGCYGDGGAIFTNDDHYAELIRSLRVHGKGKDKYDNIRVGMNSRLDTL
CCCCCCCCCCCCCCEECCCCEEEECCHHHHHHHHHHHHCCCCCCCCCCEEECCCCHHHHH
QAAVLLEKLAAFPQELISRNKAAKRYSRELSSIYKTPVTPVGYLSSWAQYTVVAEDRNAE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCEEEEEECCCCCE
IEMYKSKGIPTMIYYGTCMHQQTAFEALGYQDSDFPVASRLAKTVFSLPMHGYMMDK
EEEEECCCCCEEEEEEHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 2104607 [H]