| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119775391
Identifier: 119775391
GI number: 119775391
Start: 2719556
End: 2720596
Strand: Reverse
Name: 119775391
Synonym: Sama_2256
Alternate gene names: NA
Gene position: 2720596-2719556 (Counterclockwise)
Preceding gene: 119775392
Following gene: 119775390
Centisome position: 63.18
GC content: 32.47
Gene sequence:
>1041_bases ATGAAAATAGCACATGTGTACATTGGTAACTCAATTAAACATCCAATAATCAAGACTTATATAGATTTTTCGGCAGAAAT AGGTGTAACCGAATTAGAGCTTATTGACTCAAAGCAAGAAGGTTCTAGAGTAGCAAGAGTTTTTGATGTTTTAAAGAAGT TGGTGAATTCAAGAAGCACTATATACCAATCACATGATATAGTGTCATGTATACTAGTAAAAATTTTTAAATGGAACTCT GTGCATGTATATGACATGCATGAGATCTACTCTTCATATTTCAAAAACTCTATTATTCGGAAGTTGTTTTTTTATATAGA AAAGCTACTTTTAAAAAGTACTCAATTCGTATTGATTCCAAATGAAGAACGCGCTCAATTGTTTTTTAAAGATAGGGATA GAACAATAAAGTACGAAGTTGTCGAGAATTTACTTAATGATAAGGAACTATCAACAGAAGATTTAAACTTTAATTCGGTG CCAAAAACTTTTAAGTTCAATGAAAGGGAGCTACGTTGTTTTTACGCAGGTACTTTTACAGAGGTGAGAGCTTTATCTGA AATATGTTTAGCGATAGAATTGCTAATAGGAATTGGCTATAAAATTGTGCTAGATTTATATGGTGCAAAGACCGACTGTG TAAACAAAGTTATCAAATCTCACTCATTTGTAAACTATTGTGGAAGTGTTTCTAGGGCAGAACTACTAAGTAAGTATATT CATTATGATTTTAGTTTTGCTTTCTACAAGCCAACTAACTTAAATAACATATATTGTGCGCCCACAAAGATATTTGAACA CGAATACTATATGTTAAAAACTGTCGTTGGACCATCAGGCTATTTATTGAGGCTTGTTGACGAAGGCGTAATTAATAATG TCGTAGTATCGTTAGGTTATGAGCCAAAGGAAATTGCACATGCTATTACGAGAGTATTAGATAGCGACCAAGGTGCCGTA TCGCAGAGGCAGAAAGAAAGATTACTTTGGTCCTATCAAATTTCAAAAATAAAACAATTATATCGAAAGTTTAATGGCTG A
Upstream 100 bases:
>100_bases GAAGCCTTAGGATATCAGGATTCAGATTTTCCCGTCGCAAGCAGATTAGCTAAAACTGTATTTAGCTTACCAATGCATGG TTACATGATGGATAAATAGA
Downstream 100 bases:
>100_bases CTATTTTTTTATTCTCATAGCGTTTCTATCTGCATTTTTTGTCGTGACATACCCTAGACAGGGGACTAAAGTATTTTTGT TCGTAATTGCGACTCTGCCT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 346; Mature: 346
Protein sequence:
>346_residues MKIAHVYIGNSIKHPIIKTYIDFSAEIGVTELELIDSKQEGSRVARVFDVLKKLVNSRSTIYQSHDIVSCILVKIFKWNS VHVYDMHEIYSSYFKNSIIRKLFFYIEKLLLKSTQFVLIPNEERAQLFFKDRDRTIKYEVVENLLNDKELSTEDLNFNSV PKTFKFNERELRCFYAGTFTEVRALSEICLAIELLIGIGYKIVLDLYGAKTDCVNKVIKSHSFVNYCGSVSRAELLSKYI HYDFSFAFYKPTNLNNIYCAPTKIFEHEYYMLKTVVGPSGYLLRLVDEGVINNVVVSLGYEPKEIAHAITRVLDSDQGAV SQRQKERLLWSYQISKIKQLYRKFNG
Sequences:
>Translated_346_residues MKIAHVYIGNSIKHPIIKTYIDFSAEIGVTELELIDSKQEGSRVARVFDVLKKLVNSRSTIYQSHDIVSCILVKIFKWNS VHVYDMHEIYSSYFKNSIIRKLFFYIEKLLLKSTQFVLIPNEERAQLFFKDRDRTIKYEVVENLLNDKELSTEDLNFNSV PKTFKFNERELRCFYAGTFTEVRALSEICLAIELLIGIGYKIVLDLYGAKTDCVNKVIKSHSFVNYCGSVSRAELLSKYI HYDFSFAFYKPTNLNNIYCAPTKIFEHEYYMLKTVVGPSGYLLRLVDEGVINNVVVSLGYEPKEIAHAITRVLDSDQGAV SQRQKERLLWSYQISKIKQLYRKFNG >Mature_346_residues MKIAHVYIGNSIKHPIIKTYIDFSAEIGVTELELIDSKQEGSRVARVFDVLKKLVNSRSTIYQSHDIVSCILVKIFKWNS VHVYDMHEIYSSYFKNSIIRKLFFYIEKLLLKSTQFVLIPNEERAQLFFKDRDRTIKYEVVENLLNDKELSTEDLNFNSV PKTFKFNERELRCFYAGTFTEVRALSEICLAIELLIGIGYKIVLDLYGAKTDCVNKVIKSHSFVNYCGSVSRAELLSKYI HYDFSFAFYKPTNLNNIYCAPTKIFEHEYYMLKTVVGPSGYLLRLVDEGVINNVVVSLGYEPKEIAHAITRVLDSDQGAV SQRQKERLLWSYQISKIKQLYRKFNG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 40218; Mature: 40218
Theoretical pI: Translated: 8.95; Mature: 8.95
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKIAHVYIGNSIKHPIIKTYIDFSAEIGVTELELIDSKQEGSRVARVFDVLKKLVNSRST CEEEEEEECCCCCCHHHHHHHCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHCCHHH IYQSHDIVSCILVKIFKWNSVHVYDMHEIYSSYFKNSIIRKLFFYIEKLLLKSTQFVLIP HHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEC NEERAQLFFKDRDRTIKYEVVENLLNDKELSTEDLNFNSVPKTFKFNERELRCFYAGTFT CCCHHHEEEECCCCEEHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECHHH EVRALSEICLAIELLIGIGYKIVLDLYGAKTDCVNKVIKSHSFVNYCGSVSRAELLSKYI HHHHHHHHHHHHHHHHHCCHHEEHHHHCCCHHHHHHHHHHCCHHHHHCCHHHHHHHHHHH HYDFSFAFYKPTNLNNIYCAPTKIFEHEYYMLKTVVGPSGYLLRLVDEGVINNVVVSLGY HCCEEEEEECCCCCCEEEECCHHHHHHHHEEEEEEECCCCCEEHHHHHHHHHHHHHCCCC EPKEIAHAITRVLDSDQGAVSQRQKERLLWSYQISKIKQLYRKFNG CHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MKIAHVYIGNSIKHPIIKTYIDFSAEIGVTELELIDSKQEGSRVARVFDVLKKLVNSRST CEEEEEEECCCCCCHHHHHHHCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHCCHHH IYQSHDIVSCILVKIFKWNSVHVYDMHEIYSSYFKNSIIRKLFFYIEKLLLKSTQFVLIP HHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEC NEERAQLFFKDRDRTIKYEVVENLLNDKELSTEDLNFNSVPKTFKFNERELRCFYAGTFT CCCHHHEEEECCCCEEHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECHHH EVRALSEICLAIELLIGIGYKIVLDLYGAKTDCVNKVIKSHSFVNYCGSVSRAELLSKYI HHHHHHHHHHHHHHHHHCCHHEEHHHHCCCHHHHHHHHHHCCHHHHHCCHHHHHHHHHHH HYDFSFAFYKPTNLNNIYCAPTKIFEHEYYMLKTVVGPSGYLLRLVDEGVINNVVVSLGY HCCEEEEEECCCCCCEEEECCHHHHHHHHEEEEEEECCCCCEEHHHHHHHHHHHHHCCCC EPKEIAHAITRVLDSDQGAVSQRQKERLLWSYQISKIKQLYRKFNG CHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA