Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

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The map label for this gene is 119775390

Identifier: 119775390

GI number: 119775390

Start: 2718364

End: 2719563

Strand: Reverse

Name: 119775390

Synonym: Sama_2255

Alternate gene names: NA

Gene position: 2719563-2718364 (Counterclockwise)

Preceding gene: 119775391

Following gene: 119775389

Centisome position: 63.16

GC content: 31.83

Gene sequence:

>1200_bases
ATGGCTGACTATTTTTTTATTCTCATAGCGTTTCTATCTGCATTTTTTGTCGTGACATACCCTAGACAGGGGACTAAAGT
ATTTTTGTTCGTAATTGCGACTCTGCCTTTAGGTCTTGTTTTTGATGTCAAGTTAATGGCGTTTAGTTATATTAGAGTAT
TTATTTTCTCTAGTGCTTTTTTTGTTATTCTCACTATTCCATTTAGTGATATTAGGCTAAATTCAACGTACTTAATATCA
TTTTTCTTGATCTGCTTTGTTTCTATTTTTAGTTATACTGTTAATGACTTCGGGAATGTGTGGAGCTTAGTGCGTGACTT
ATTCGGATTAAGCTTGCTTTATTGCACAATTATTGTGGGAGATTACTTAAAAAAGCGAACTTCAATTGAATTGCTTTGGC
TTAAATATTGGGTGATTTTTGCAGTAGTAATTGATATTTTCAGCTATTTCATAATTTTGCATTTCCAAATTTCTATAGAA
GGTATTAGAGGGGAGGTACTCTCGCGAACCGGTTTTCTTCGATATGCTGACGTACTATCTATTACTTTATATGCGTTAAG
TATCTATTTCTTTTTTCAAAGCCGAGGGCGAATGCTTTGGGCACTTATCATATTTATTATACCAGCGATAAGTGCTGAAA
GAGTTCTACTCATATCTACATTAATTTGCTATCTATTTTACTTAAAAAGTATATCAATAAAATCAGTTGTTTTTTACAGC
GTTATTGCCTTCTTATTGATACTTACTTTTAGTCAAGATTTTATAAATAACTTACTAATCTTTAAAGACCAGGAAATGTT
GCAGCGTTTTAAGGAGATTTCCTCGATCGAAGGTATATATATTTCGTTGTTTTACAGATTTGCAGCACCAGCGTTAGAAG
GAGGGTACACTTTGGACGCTTATACACTTTTATTTGGTAGTGGTGGTGGATTTCTGTTTTACATACCTTGGTTTGTGTAT
AGAGGTATCGATCCATTTCAGGTTAGCTCAGATAGCTTTTTTTTCGTTTCTTTCATTAAATACGGATTAGTTGGTTTATC
AATTTTAATATTCATGTTTTATCGGTTCTTGAGTAATGTTCCGAGAGTATATTTATTCTGGATAGTTGGATTTGCTATTG
TTCAGAATGTTGTTTATGTAGATGCATTTTTGTTAATGATGATTTTATTTCAATTATTAAATAGGAAGAATATTGAATAA

Upstream 100 bases:

>100_bases
GTATTAGATAGCGACCAAGGTGCCGTATCGCAGAGGCAGAAAGAAAGATTACTTTGGTCCTATCAAATTTCAAAAATAAA
ACAATTATATCGAAAGTTTA

Downstream 100 bases:

>100_bases
CATCTTTTATTACTCATCAACCCTTGTTAAAGCACTATCCTCATATCTTTTGGTCTTTATTATATCGAATAACTATACAT
CTGAAGAATTGGGAGTATAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 399; Mature: 398

Protein sequence:

>399_residues
MADYFFILIAFLSAFFVVTYPRQGTKVFLFVIATLPLGLVFDVKLMAFSYIRVFIFSSAFFVILTIPFSDIRLNSTYLIS
FFLICFVSIFSYTVNDFGNVWSLVRDLFGLSLLYCTIIVGDYLKKRTSIELLWLKYWVIFAVVIDIFSYFIILHFQISIE
GIRGEVLSRTGFLRYADVLSITLYALSIYFFFQSRGRMLWALIIFIIPAISAERVLLISTLICYLFYLKSISIKSVVFYS
VIAFLLILTFSQDFINNLLIFKDQEMLQRFKEISSIEGIYISLFYRFAAPALEGGYTLDAYTLLFGSGGGFLFYIPWFVY
RGIDPFQVSSDSFFFVSFIKYGLVGLSILIFMFYRFLSNVPRVYLFWIVGFAIVQNVVYVDAFLLMMILFQLLNRKNIE

Sequences:

>Translated_399_residues
MADYFFILIAFLSAFFVVTYPRQGTKVFLFVIATLPLGLVFDVKLMAFSYIRVFIFSSAFFVILTIPFSDIRLNSTYLIS
FFLICFVSIFSYTVNDFGNVWSLVRDLFGLSLLYCTIIVGDYLKKRTSIELLWLKYWVIFAVVIDIFSYFIILHFQISIE
GIRGEVLSRTGFLRYADVLSITLYALSIYFFFQSRGRMLWALIIFIIPAISAERVLLISTLICYLFYLKSISIKSVVFYS
VIAFLLILTFSQDFINNLLIFKDQEMLQRFKEISSIEGIYISLFYRFAAPALEGGYTLDAYTLLFGSGGGFLFYIPWFVY
RGIDPFQVSSDSFFFVSFIKYGLVGLSILIFMFYRFLSNVPRVYLFWIVGFAIVQNVVYVDAFLLMMILFQLLNRKNIE
>Mature_398_residues
ADYFFILIAFLSAFFVVTYPRQGTKVFLFVIATLPLGLVFDVKLMAFSYIRVFIFSSAFFVILTIPFSDIRLNSTYLISF
FLICFVSIFSYTVNDFGNVWSLVRDLFGLSLLYCTIIVGDYLKKRTSIELLWLKYWVIFAVVIDIFSYFIILHFQISIEG
IRGEVLSRTGFLRYADVLSITLYALSIYFFFQSRGRMLWALIIFIIPAISAERVLLISTLICYLFYLKSISIKSVVFYSV
IAFLLILTFSQDFINNLLIFKDQEMLQRFKEISSIEGIYISLFYRFAAPALEGGYTLDAYTLLFGSGGGFLFYIPWFVYR
GIDPFQVSSDSFFFVSFIKYGLVGLSILIFMFYRFLSNVPRVYLFWIVGFAIVQNVVYVDAFLLMMILFQLLNRKNIE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 46431; Mature: 46300

Theoretical pI: Translated: 9.00; Mature: 9.00

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADYFFILIAFLSAFFVVTYPRQGTKVFLFVIATLPLGLVFDVKLMAFSYIRVFIFSSAF
CCHHHHHHHHHHHHHHHEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FVILTIPFSDIRLNSTYLISFFLICFVSIFSYTVNDFGNVWSLVRDLFGLSLLYCTIIVG
HEEEEECCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DYLKKRTSIELLWLKYWVIFAVVIDIFSYFIILHFQISIEGIRGEVLSRTGFLRYADVLS
HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECHHHHHHHHCCHHHHHHHHH
ITLYALSIYFFFQSRGRMLWALIIFIIPAISAERVLLISTLICYLFYLKSISIKSVVFYS
HHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHH
VIAFLLILTFSQDFINNLLIFKDQEMLQRFKEISSIEGIYISLFYRFAAPALEGGYTLDA
HHHHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHCCHHHHHHHHHHHCHHHCCCCEEEH
YTLLFGSGGGFLFYIPWFVYRGIDPFQVSSDSFFFVSFIKYGLVGLSILIFMFYRFLSNV
EEEEEECCCCCEEEHHHHHHCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PRVYLFWIVGFAIVQNVVYVDAFLLMMILFQLLNRKNIE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
ADYFFILIAFLSAFFVVTYPRQGTKVFLFVIATLPLGLVFDVKLMAFSYIRVFIFSSAF
CHHHHHHHHHHHHHHHEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FVILTIPFSDIRLNSTYLISFFLICFVSIFSYTVNDFGNVWSLVRDLFGLSLLYCTIIVG
HEEEEECCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DYLKKRTSIELLWLKYWVIFAVVIDIFSYFIILHFQISIEGIRGEVLSRTGFLRYADVLS
HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECHHHHHHHHCCHHHHHHHHH
ITLYALSIYFFFQSRGRMLWALIIFIIPAISAERVLLISTLICYLFYLKSISIKSVVFYS
HHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHH
VIAFLLILTFSQDFINNLLIFKDQEMLQRFKEISSIEGIYISLFYRFAAPALEGGYTLDA
HHHHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHCCHHHHHHHHHHHCHHHCCCCEEEH
YTLLFGSGGGFLFYIPWFVYRGIDPFQVSSDSFFFVSFIKYGLVGLSILIFMFYRFLSNV
EEEEEECCCCCEEEHHHHHHCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PRVYLFWIVGFAIVQNVVYVDAFLLMMILFQLLNRKNIE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA