| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119775390
Identifier: 119775390
GI number: 119775390
Start: 2718364
End: 2719563
Strand: Reverse
Name: 119775390
Synonym: Sama_2255
Alternate gene names: NA
Gene position: 2719563-2718364 (Counterclockwise)
Preceding gene: 119775391
Following gene: 119775389
Centisome position: 63.16
GC content: 31.83
Gene sequence:
>1200_bases ATGGCTGACTATTTTTTTATTCTCATAGCGTTTCTATCTGCATTTTTTGTCGTGACATACCCTAGACAGGGGACTAAAGT ATTTTTGTTCGTAATTGCGACTCTGCCTTTAGGTCTTGTTTTTGATGTCAAGTTAATGGCGTTTAGTTATATTAGAGTAT TTATTTTCTCTAGTGCTTTTTTTGTTATTCTCACTATTCCATTTAGTGATATTAGGCTAAATTCAACGTACTTAATATCA TTTTTCTTGATCTGCTTTGTTTCTATTTTTAGTTATACTGTTAATGACTTCGGGAATGTGTGGAGCTTAGTGCGTGACTT ATTCGGATTAAGCTTGCTTTATTGCACAATTATTGTGGGAGATTACTTAAAAAAGCGAACTTCAATTGAATTGCTTTGGC TTAAATATTGGGTGATTTTTGCAGTAGTAATTGATATTTTCAGCTATTTCATAATTTTGCATTTCCAAATTTCTATAGAA GGTATTAGAGGGGAGGTACTCTCGCGAACCGGTTTTCTTCGATATGCTGACGTACTATCTATTACTTTATATGCGTTAAG TATCTATTTCTTTTTTCAAAGCCGAGGGCGAATGCTTTGGGCACTTATCATATTTATTATACCAGCGATAAGTGCTGAAA GAGTTCTACTCATATCTACATTAATTTGCTATCTATTTTACTTAAAAAGTATATCAATAAAATCAGTTGTTTTTTACAGC GTTATTGCCTTCTTATTGATACTTACTTTTAGTCAAGATTTTATAAATAACTTACTAATCTTTAAAGACCAGGAAATGTT GCAGCGTTTTAAGGAGATTTCCTCGATCGAAGGTATATATATTTCGTTGTTTTACAGATTTGCAGCACCAGCGTTAGAAG GAGGGTACACTTTGGACGCTTATACACTTTTATTTGGTAGTGGTGGTGGATTTCTGTTTTACATACCTTGGTTTGTGTAT AGAGGTATCGATCCATTTCAGGTTAGCTCAGATAGCTTTTTTTTCGTTTCTTTCATTAAATACGGATTAGTTGGTTTATC AATTTTAATATTCATGTTTTATCGGTTCTTGAGTAATGTTCCGAGAGTATATTTATTCTGGATAGTTGGATTTGCTATTG TTCAGAATGTTGTTTATGTAGATGCATTTTTGTTAATGATGATTTTATTTCAATTATTAAATAGGAAGAATATTGAATAA
Upstream 100 bases:
>100_bases GTATTAGATAGCGACCAAGGTGCCGTATCGCAGAGGCAGAAAGAAAGATTACTTTGGTCCTATCAAATTTCAAAAATAAA ACAATTATATCGAAAGTTTA
Downstream 100 bases:
>100_bases CATCTTTTATTACTCATCAACCCTTGTTAAAGCACTATCCTCATATCTTTTGGTCTTTATTATATCGAATAACTATACAT CTGAAGAATTGGGAGTATAT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 399; Mature: 398
Protein sequence:
>399_residues MADYFFILIAFLSAFFVVTYPRQGTKVFLFVIATLPLGLVFDVKLMAFSYIRVFIFSSAFFVILTIPFSDIRLNSTYLIS FFLICFVSIFSYTVNDFGNVWSLVRDLFGLSLLYCTIIVGDYLKKRTSIELLWLKYWVIFAVVIDIFSYFIILHFQISIE GIRGEVLSRTGFLRYADVLSITLYALSIYFFFQSRGRMLWALIIFIIPAISAERVLLISTLICYLFYLKSISIKSVVFYS VIAFLLILTFSQDFINNLLIFKDQEMLQRFKEISSIEGIYISLFYRFAAPALEGGYTLDAYTLLFGSGGGFLFYIPWFVY RGIDPFQVSSDSFFFVSFIKYGLVGLSILIFMFYRFLSNVPRVYLFWIVGFAIVQNVVYVDAFLLMMILFQLLNRKNIE
Sequences:
>Translated_399_residues MADYFFILIAFLSAFFVVTYPRQGTKVFLFVIATLPLGLVFDVKLMAFSYIRVFIFSSAFFVILTIPFSDIRLNSTYLIS FFLICFVSIFSYTVNDFGNVWSLVRDLFGLSLLYCTIIVGDYLKKRTSIELLWLKYWVIFAVVIDIFSYFIILHFQISIE GIRGEVLSRTGFLRYADVLSITLYALSIYFFFQSRGRMLWALIIFIIPAISAERVLLISTLICYLFYLKSISIKSVVFYS VIAFLLILTFSQDFINNLLIFKDQEMLQRFKEISSIEGIYISLFYRFAAPALEGGYTLDAYTLLFGSGGGFLFYIPWFVY RGIDPFQVSSDSFFFVSFIKYGLVGLSILIFMFYRFLSNVPRVYLFWIVGFAIVQNVVYVDAFLLMMILFQLLNRKNIE >Mature_398_residues ADYFFILIAFLSAFFVVTYPRQGTKVFLFVIATLPLGLVFDVKLMAFSYIRVFIFSSAFFVILTIPFSDIRLNSTYLISF FLICFVSIFSYTVNDFGNVWSLVRDLFGLSLLYCTIIVGDYLKKRTSIELLWLKYWVIFAVVIDIFSYFIILHFQISIEG IRGEVLSRTGFLRYADVLSITLYALSIYFFFQSRGRMLWALIIFIIPAISAERVLLISTLICYLFYLKSISIKSVVFYSV IAFLLILTFSQDFINNLLIFKDQEMLQRFKEISSIEGIYISLFYRFAAPALEGGYTLDAYTLLFGSGGGFLFYIPWFVYR GIDPFQVSSDSFFFVSFIKYGLVGLSILIFMFYRFLSNVPRVYLFWIVGFAIVQNVVYVDAFLLMMILFQLLNRKNIE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 46431; Mature: 46300
Theoretical pI: Translated: 9.00; Mature: 9.00
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MADYFFILIAFLSAFFVVTYPRQGTKVFLFVIATLPLGLVFDVKLMAFSYIRVFIFSSAF CCHHHHHHHHHHHHHHHEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FVILTIPFSDIRLNSTYLISFFLICFVSIFSYTVNDFGNVWSLVRDLFGLSLLYCTIIVG HEEEEECCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH DYLKKRTSIELLWLKYWVIFAVVIDIFSYFIILHFQISIEGIRGEVLSRTGFLRYADVLS HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECHHHHHHHHCCHHHHHHHHH ITLYALSIYFFFQSRGRMLWALIIFIIPAISAERVLLISTLICYLFYLKSISIKSVVFYS HHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHH VIAFLLILTFSQDFINNLLIFKDQEMLQRFKEISSIEGIYISLFYRFAAPALEGGYTLDA HHHHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHCCHHHHHHHHHHHCHHHCCCCEEEH YTLLFGSGGGFLFYIPWFVYRGIDPFQVSSDSFFFVSFIKYGLVGLSILIFMFYRFLSNV EEEEEECCCCCEEEHHHHHHCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC PRVYLFWIVGFAIVQNVVYVDAFLLMMILFQLLNRKNIE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC >Mature Secondary Structure ADYFFILIAFLSAFFVVTYPRQGTKVFLFVIATLPLGLVFDVKLMAFSYIRVFIFSSAF CHHHHHHHHHHHHHHHEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FVILTIPFSDIRLNSTYLISFFLICFVSIFSYTVNDFGNVWSLVRDLFGLSLLYCTIIVG HEEEEECCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH DYLKKRTSIELLWLKYWVIFAVVIDIFSYFIILHFQISIEGIRGEVLSRTGFLRYADVLS HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECHHHHHHHHCCHHHHHHHHH ITLYALSIYFFFQSRGRMLWALIIFIIPAISAERVLLISTLICYLFYLKSISIKSVVFYS HHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHH VIAFLLILTFSQDFINNLLIFKDQEMLQRFKEISSIEGIYISLFYRFAAPALEGGYTLDA HHHHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHCCHHHHHHHHHHHCHHHCCCCEEEH YTLLFGSGGGFLFYIPWFVYRGIDPFQVSSDSFFFVSFIKYGLVGLSILIFMFYRFLSNV EEEEEECCCCCEEEHHHHHHCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC PRVYLFWIVGFAIVQNVVYVDAFLLMMILFQLLNRKNIE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA