| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119775364
Identifier: 119775364
GI number: 119775364
Start: 2693918
End: 2694610
Strand: Reverse
Name: 119775364
Synonym: Sama_2229
Alternate gene names: NA
Gene position: 2694610-2693918 (Counterclockwise)
Preceding gene: 119775365
Following gene: 119775357
Centisome position: 62.58
GC content: 54.98
Gene sequence:
>693_bases ATGACAGAGCAAAGAAATGGACATTTTTCCATCGTAGCGGCCACCAAGCGAAACGGCATCACCTTAACCGTAATAAGTGC ACTGCTGCTGTGTGTTTCGCTGCTGATTTTTATCACCGCCAGACACTGGTTTGGCCCGGGCTTGGTGCTATTTACCCTGG GGGCCGTGGGCCTGGTGCTGGGGTATGCCAAGGTGTCACAACCTCCCGAGTCGCTCAAAGGCGACGCCGGAGGATTGGTG TTTTTTCATCGTAGAGGGCAATACCGGCTTGACTGGGAGAACATTCAGCGCATCGATGTCCCCCGCGTAAGCCAGGGATT GGATAGCCTGGACTTGCCTTTTATCGGCATTAAAGTTAAAAAAATCAATCCGGTGCTTGATAGTATCTCTCCCAGACTTG CCACCGGGCTTTTGTCCGAACAGCGTCCGTTATTGATGACGGCTGCGGCGCAGGACGACACACTCGAATCCCTTGAAACC CAGCTTGGCGCCGAATTTACCCCCCTGCTCACCCATGGCGAGCGGTATCGCGGCGTGCTGGCGATGTTTGGCCATCGCTG CCTGCTGCTGGATAAGCGGCTTGGCTATCACCTCTATATCCCCGCCGATGCCCTTGATGATGAACCTGTGGTTGTTGCCA GGCGACTGAGGGAGTTCAAGGCGCTGCAACTCAGCCTCAGTAATCAACCCTAG
Upstream 100 bases:
>100_bases AATCCACCTGGTGGCGACTAAATGCCGACGCCCTGAACAGCGCACAAAAGGCTATCCATGAATATGTTGGCACTCTGTGG TTTGAGTTGAGGTACGGGGC
Downstream 100 bases:
>100_bases CAATCAACCCTAGCAATCAGCCATAGCACTAAGCCATAGCAATCAGGAATGAAAACGGGGGCCCGAAGGCCCCCGATGGG TTTGCAGAGAACTGGGCTTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 230; Mature: 229
Protein sequence:
>230_residues MTEQRNGHFSIVAATKRNGITLTVISALLLCVSLLIFITARHWFGPGLVLFTLGAVGLVLGYAKVSQPPESLKGDAGGLV FFHRRGQYRLDWENIQRIDVPRVSQGLDSLDLPFIGIKVKKINPVLDSISPRLATGLLSEQRPLLMTAAAQDDTLESLET QLGAEFTPLLTHGERYRGVLAMFGHRCLLLDKRLGYHLYIPADALDDEPVVVARRLREFKALQLSLSNQP
Sequences:
>Translated_230_residues MTEQRNGHFSIVAATKRNGITLTVISALLLCVSLLIFITARHWFGPGLVLFTLGAVGLVLGYAKVSQPPESLKGDAGGLV FFHRRGQYRLDWENIQRIDVPRVSQGLDSLDLPFIGIKVKKINPVLDSISPRLATGLLSEQRPLLMTAAAQDDTLESLET QLGAEFTPLLTHGERYRGVLAMFGHRCLLLDKRLGYHLYIPADALDDEPVVVARRLREFKALQLSLSNQP >Mature_229_residues TEQRNGHFSIVAATKRNGITLTVISALLLCVSLLIFITARHWFGPGLVLFTLGAVGLVLGYAKVSQPPESLKGDAGGLVF FHRRGQYRLDWENIQRIDVPRVSQGLDSLDLPFIGIKVKKINPVLDSISPRLATGLLSEQRPLLMTAAAQDDTLESLETQ LGAEFTPLLTHGERYRGVLAMFGHRCLLLDKRLGYHLYIPADALDDEPVVVARRLREFKALQLSLSNQP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 25466; Mature: 25335
Theoretical pI: Translated: 9.11; Mature: 9.11
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTEQRNGHFSIVAATKRNGITLTVISALLLCVSLLIFITARHWFGPGLVLFTLGAVGLVL CCCCCCCCEEEEEEECCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH GYAKVSQPPESLKGDAGGLVFFHRRGQYRLDWENIQRIDVPRVSQGLDSLDLPFIGIKVK HHHHHCCCHHHHCCCCCCEEEEEECCCEEECHHHCCCCCCCCHHCCCCCCCCCEEEEEEE KINPVLDSISPRLATGLLSEQRPLLMTAAAQDDTLESLETQLGAEFTPLLTHGERYRGVL ECCHHHHHCCHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCHHHHCCHHHHHHH AMFGHRCLLLDKRLGYHLYIPADALDDEPVVVARRLREFKALQLSLSNQP HHHCCEEEEEECCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHEECCCCC >Mature Secondary Structure TEQRNGHFSIVAATKRNGITLTVISALLLCVSLLIFITARHWFGPGLVLFTLGAVGLVL CCCCCCCEEEEEEECCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH GYAKVSQPPESLKGDAGGLVFFHRRGQYRLDWENIQRIDVPRVSQGLDSLDLPFIGIKVK HHHHHCCCHHHHCCCCCCEEEEEECCCEEECHHHCCCCCCCCHHCCCCCCCCCEEEEEEE KINPVLDSISPRLATGLLSEQRPLLMTAAAQDDTLESLETQLGAEFTPLLTHGERYRGVL ECCHHHHHCCHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCHHHHCCHHHHHHH AMFGHRCLLLDKRLGYHLYIPADALDDEPVVVARRLREFKALQLSLSNQP HHHCCEEEEEECCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA