| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is trpE [H]
Identifier: 119775264
GI number: 119775264
Start: 2574098
End: 2575681
Strand: Direct
Name: trpE [H]
Synonym: Sama_2129
Alternate gene names: 119775264
Gene position: 2574098-2575681 (Clockwise)
Preceding gene: 119775257
Following gene: 119775265
Centisome position: 59.78
GC content: 55.24
Gene sequence:
>1584_bases ATGACACAACAGGCGTTTGATGCCAAGGCAGAGGGAAAGCTGGCCACAGGCAAATTGACCAAGCAGCCCTTGCCTTACCA GGATGACCCGCTGGCCCTCTACGAGAGCCTGACTCAGGATGCCCACCACACACTTTTGCTGGAATCGGCTGAAATCGACA GCAAAGAGAACCTGAAAAGCATCATCATGACCCACGCGGCCCTGAAAATTGCAGCCCAGGGCTATCGGTTGGAGTTTACC GCGCTGGACGACAATGGCCGGGTGCTGCTGCCTGCCATCGCCGGTTTTTTTAACTGCGAACTGACTGAAACCAATTACCT TGCCGTGACCTTAACACGCGACACCGGTCTACTGGATGAAGATGCCAGGCTAAAATCCACCTCGCCTCTGGATGGCCTGC GGGCACTACTCAAACATATCCATGTGGGTGAAAAGGTTGCCTTTGAGGATCTTTTCCTCGGTGGCGTACTGGCATACGAT TTGATTGATACCGTTGAGCCACTTCCCAAAGCAAGGGACGGCGCCAATACCTGCCCGGATTATCTCTTTTATCTCGCCGA CACCCTGGTGCTTGTGGACCACAAGGCCAAACAGGCCGAGTTGGTCTTGTCGACCTTTTCCGCGGACGGGCAAATATCCC CCTTCATAGAAGATGAACTCAAGCGCCGCGCCAAGGTGATCGAGGCCATCGCCAATCGTCCCCGCCCGGTTAAAGCCCTC AAACCGGTGAATGTCGAGGCCAGCGTCAGCATCAGTGACGAAGACTTTAAAGACGCGGTGAACGCCCTGAAAGAGCACAT CATCGCCGGCGATATTTTTCAGGTGGTGCCTTCAAGAAGCTTCAGTCTGCCTTGCCCCAATACCCTTGGCGCTTATAGAG CACTGCGTAAAACCAATCCCAGCCCCTACATGTTTTATTTTCGCAGCAGCGATTTCACCCTCTTTGGCGCCTCACCTGAA AGCGCGCTCAAATACGATGCTGACAGTAATCAGGTGGAAGTCTACCCCATCGCCGGTACCCGTAAGCGCGGCAAAGATGC CAGTGGCAACATAGATCACGACCTGGATGGCCGTATCGAGCTGGAGCTGCGCCTCGATAAAAAGGAACTCTCTGAGCACC TGATGCTGGTCGATTTGGCCCGAAATGATATAGCCCGTATCAGCCAAAGCGGCACCCGCAAGGTAGCAGAGCTGTTGAAA GTTGACCGCTACAGCCACGTGATGCATCTGGTCAGCCGGGTCACAGGTCAACTGAGGCAGGATCTCGACGCCCTCCATGC TTATCAGGCCTGCATGAATATGGGCACGCTCACAGGCGCACCCAAGGTCAGGGCTTCCCAGCTTATCCGCGAAACGGAAA AGACACGCAGGGGCAGCTATGGCGGCGCCGTGGGTTACCTTTCCGCCACCGGTGACATGGATACCTGTATCGTTATTCGT TCGGCCTTTGTGAAAGACGGCCTTGCCCATATCCAGGCCGGTGCCGGTGTGGTGTATGACTCAGATCCCCAGGCAGAGGC AGACGAAACCCGTCAAAAAGCACAGGCAGTGATCTCTGCCATCAAACTGGGAGGTGGCCTGTGA
Upstream 100 bases:
>100_bases CGTTTAACAGACACAAGATTCATCGAAAAGGCCCGCACTACGCGGGCCTTTTTGCATCTGGCCCGGTGAAAAGCGGCACA AAAACTTGAAGGATAACCGG
Downstream 100 bases:
>100_bases AACTCTATTTACTCGATAACTTCGACTCTTTTACTTACAACCTGGTCGACCAATTCCGCGCGCTGGGCTTTGAGGTAGTG ATTTACCGTAACGACGTTGA
Product: anthranilate synthase component I
Products: NA
Alternate protein names: Anthranilate synthase component I [H]
Number of amino acids: Translated: 527; Mature: 526
Protein sequence:
>527_residues MTQQAFDAKAEGKLATGKLTKQPLPYQDDPLALYESLTQDAHHTLLLESAEIDSKENLKSIIMTHAALKIAAQGYRLEFT ALDDNGRVLLPAIAGFFNCELTETNYLAVTLTRDTGLLDEDARLKSTSPLDGLRALLKHIHVGEKVAFEDLFLGGVLAYD LIDTVEPLPKARDGANTCPDYLFYLADTLVLVDHKAKQAELVLSTFSADGQISPFIEDELKRRAKVIEAIANRPRPVKAL KPVNVEASVSISDEDFKDAVNALKEHIIAGDIFQVVPSRSFSLPCPNTLGAYRALRKTNPSPYMFYFRSSDFTLFGASPE SALKYDADSNQVEVYPIAGTRKRGKDASGNIDHDLDGRIELELRLDKKELSEHLMLVDLARNDIARISQSGTRKVAELLK VDRYSHVMHLVSRVTGQLRQDLDALHAYQACMNMGTLTGAPKVRASQLIRETEKTRRGSYGGAVGYLSATGDMDTCIVIR SAFVKDGLAHIQAGAGVVYDSDPQAEADETRQKAQAVISAIKLGGGL
Sequences:
>Translated_527_residues MTQQAFDAKAEGKLATGKLTKQPLPYQDDPLALYESLTQDAHHTLLLESAEIDSKENLKSIIMTHAALKIAAQGYRLEFT ALDDNGRVLLPAIAGFFNCELTETNYLAVTLTRDTGLLDEDARLKSTSPLDGLRALLKHIHVGEKVAFEDLFLGGVLAYD LIDTVEPLPKARDGANTCPDYLFYLADTLVLVDHKAKQAELVLSTFSADGQISPFIEDELKRRAKVIEAIANRPRPVKAL KPVNVEASVSISDEDFKDAVNALKEHIIAGDIFQVVPSRSFSLPCPNTLGAYRALRKTNPSPYMFYFRSSDFTLFGASPE SALKYDADSNQVEVYPIAGTRKRGKDASGNIDHDLDGRIELELRLDKKELSEHLMLVDLARNDIARISQSGTRKVAELLK VDRYSHVMHLVSRVTGQLRQDLDALHAYQACMNMGTLTGAPKVRASQLIRETEKTRRGSYGGAVGYLSATGDMDTCIVIR SAFVKDGLAHIQAGAGVVYDSDPQAEADETRQKAQAVISAIKLGGGL >Mature_526_residues TQQAFDAKAEGKLATGKLTKQPLPYQDDPLALYESLTQDAHHTLLLESAEIDSKENLKSIIMTHAALKIAAQGYRLEFTA LDDNGRVLLPAIAGFFNCELTETNYLAVTLTRDTGLLDEDARLKSTSPLDGLRALLKHIHVGEKVAFEDLFLGGVLAYDL IDTVEPLPKARDGANTCPDYLFYLADTLVLVDHKAKQAELVLSTFSADGQISPFIEDELKRRAKVIEAIANRPRPVKALK PVNVEASVSISDEDFKDAVNALKEHIIAGDIFQVVPSRSFSLPCPNTLGAYRALRKTNPSPYMFYFRSSDFTLFGASPES ALKYDADSNQVEVYPIAGTRKRGKDASGNIDHDLDGRIELELRLDKKELSEHLMLVDLARNDIARISQSGTRKVAELLKV DRYSHVMHLVSRVTGQLRQDLDALHAYQACMNMGTLTGAPKVRASQLIRETEKTRRGSYGGAVGYLSATGDMDTCIVIRS AFVKDGLAHIQAGAGVVYDSDPQAEADETRQKAQAVISAIKLGGGL
Specific function: Tryptophan biosynthesis; first step. [C]
COG id: COG0147
COG function: function code EH; Anthranilate/para-aminobenzoate synthases component I
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1787518, Length=500, Percent_Identity=55, Blast_Score=513, Evalue=1e-146, Organism=Escherichia coli, GI1788114, Length=432, Percent_Identity=28.9351851851852, Blast_Score=166, Evalue=4e-42, Organism=Escherichia coli, GI1786809, Length=228, Percent_Identity=29.3859649122807, Blast_Score=72, Evalue=8e-14, Organism=Escherichia coli, GI87082077, Length=265, Percent_Identity=27.5471698113208, Blast_Score=69, Evalue=1e-12, Organism=Saccharomyces cerevisiae, GI6320935, Length=409, Percent_Identity=37.4083129584352, Blast_Score=237, Evalue=3e-63, Organism=Saccharomyces cerevisiae, GI6324361, Length=384, Percent_Identity=24.21875, Blast_Score=95, Evalue=3e-20,
Paralogues:
None
Copy number: 700 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005801 - InterPro: IPR019999 - InterPro: IPR006805 - InterPro: IPR005257 - InterPro: IPR015890 [H]
Pfam domain/function: PF04715 Anth_synt_I_N; PF00425 Chorismate_bind [H]
EC number: =4.1.3.27 [H]
Molecular weight: Translated: 57720; Mature: 57589
Theoretical pI: Translated: 5.94; Mature: 5.94
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTQQAFDAKAEGKLATGKLTKQPLPYQDDPLALYESLTQDAHHTLLLESAEIDSKENLKS CCCCCCCCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHCCHHEEEEECCCCCCHHHHHH IIMTHAALKIAAQGYRLEFTALDDNGRVLLPAIAGFFNCELTETNYLAVTLTRDTGLLDE HHHHHHHHHHHCCCEEEEEEEECCCCCEEHHHHHHHHEEEEECCCEEEEEEECCCCCCCC DARLKSTSPLDGLRALLKHIHVGEKVAFEDLFLGGVLAYDLIDTVEPLPKARDGANTCPD CCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHH YLFYLADTLVLVDHKAKQAELVLSTFSADGQISPFIEDELKRRAKVIEAIANRPRPVKAL HHHHHHHHHHEECCCCHHHHHHHEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCC KPVNVEASVSISDEDFKDAVNALKEHIIAGDIFQVVPSRSFSLPCPNTLGAYRALRKTNP CCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCC SPYMFYFRSSDFTLFGASPESALKYDADSNQVEVYPIAGTRKRGKDASGNIDHDLDGRIE CCEEEEEECCCEEEECCCCCHHEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCEEE LELRLDKKELSEHLMLVDLARNDIARISQSGTRKVAELLKVDRYSHVMHLVSRVTGQLRQ EEEEECHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH DLDALHAYQACMNMGTLTGAPKVRASQLIRETEKTRRGSYGGAVGYLSATGDMDTCIVIR HHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHH SAFVKDGLAHIQAGAGVVYDSDPQAEADETRQKAQAVISAIKLGGGL HHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure TQQAFDAKAEGKLATGKLTKQPLPYQDDPLALYESLTQDAHHTLLLESAEIDSKENLKS CCCCCCCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHCCHHEEEEECCCCCCHHHHHH IIMTHAALKIAAQGYRLEFTALDDNGRVLLPAIAGFFNCELTETNYLAVTLTRDTGLLDE HHHHHHHHHHHCCCEEEEEEEECCCCCEEHHHHHHHHEEEEECCCEEEEEEECCCCCCCC DARLKSTSPLDGLRALLKHIHVGEKVAFEDLFLGGVLAYDLIDTVEPLPKARDGANTCPD CCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHH YLFYLADTLVLVDHKAKQAELVLSTFSADGQISPFIEDELKRRAKVIEAIANRPRPVKAL HHHHHHHHHHEECCCCHHHHHHHEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCC KPVNVEASVSISDEDFKDAVNALKEHIIAGDIFQVVPSRSFSLPCPNTLGAYRALRKTNP CCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCC SPYMFYFRSSDFTLFGASPESALKYDADSNQVEVYPIAGTRKRGKDASGNIDHDLDGRIE CCEEEEEECCCEEEECCCCCHHEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCEEE LELRLDKKELSEHLMLVDLARNDIARISQSGTRKVAELLKVDRYSHVMHLVSRVTGQLRQ EEEEECHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH DLDALHAYQACMNMGTLTGAPKVRASQLIRETEKTRRGSYGGAVGYLSATGDMDTCIVIR HHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHH SAFVKDGLAHIQAGAGVVYDSDPQAEADETRQKAQAVISAIKLGGGL HHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 10952301 [H]