| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119775257
Identifier: 119775257
GI number: 119775257
Start: 2567784
End: 2568695
Strand: Direct
Name: 119775257
Synonym: Sama_2122
Alternate gene names: NA
Gene position: 2567784-2568695 (Clockwise)
Preceding gene: 119775256
Following gene: 119775264
Centisome position: 59.63
GC content: 54.39
Gene sequence:
>912_bases ATGACAGCTCCCTACCCTATTGGCACGCCCGGTTCGCCCTGGAATGATGCCGACAAGCAAGCCTGGTTTAAAGTCCAAAC AGTAAAACGCAGCTATCAGGATGAAGTGCTGTCTCGCGTGCTGCCACTGAGTGCCGATTTTGAATTGGTTAACTACGGCG CACTTTCTATCGATGCCGGACGTTTCCCGCTGTATGCCCTGAAAAACCAATGGCAGCCAGGCCTGCCGCTGGCGCTGGTT ACGGGCGGTGTTCACGGGTATGAAACCAGCGGCGTACAGGGCGCGCTGGACTTTCTCCATCAGGATGCCAAAGACTATAA GGGCAAGGTAAACCTTCTGGTTGTACCTTGCGTGAGCCCCTGGGGTTACGAAATCATCAATCGTTGGAACCCCAAAGCGG TCGATCCCAACCGCTCCTTTGTGGAAAACAGTCCATCAGAGGAATCAGCAGCCCTGCTGAAACTGGTCGCCCCCCATCAG TCTGACTTTGTGCTGCATATCGACCTGCACGAAACCACAGACACAGATGAAACTGAGTTTCGCCCGGCGCTGGCTGCCCG TGATGGCAAAGACTATGAGCCCGATGTCATCCCCGATGGCTTTTATCTGGTGGGGGATAGCGATAACCCCCAGGAAGCTT TCCAAAAAGCGATTATTGATGCGGTGGAAAAGGTCACCCATATTGCGCCCCCCGATGAGAAGGGCAACATTATCGGCTCA CCTGTGGTGCAGCATGGTGTCATTAACTACCCGGTAAAGAAACTGGGGTTGTGCGCCGGGATAACGGATGCAACCTATAC CACAACGACCGAGGTCTATCCCGACAGTCCCAAAGCAACAGCTGAAGAATGTAATGCCGCTCAGGTGGCAGCCATTCGCG CCGCGCTGGACTTTATGCTGGCAAATCGCTGA
Upstream 100 bases:
>100_bases TGGTCAGGCCTTCAGCGCACAATAAGCTCTATTCACAAGGCCCGCTGCAGCGGGCTTTTTTATATTTACTCTCAGCCAAA TACAATAAAGAGCAAAGACT
Downstream 100 bases:
>100_bases TATAGCGGCTCAACGTTTCATAGCAATAAAAACGGCTGCCTTGGCAGCCGTTTTTATTGCGCGAGTCTACTCAAGTCGGA TAGCGGCAAAGTAAATCGCC
Product: hypothetical protein
Products: NA
Alternate protein names: Zn-Dependent Deacylase/Carboxypeptidase Superfamily; Deacylase; Deacylase/Carboxypeptidase Superfamily Protein; Fusion Protein; Peptidase
Number of amino acids: Translated: 303; Mature: 302
Protein sequence:
>303_residues MTAPYPIGTPGSPWNDADKQAWFKVQTVKRSYQDEVLSRVLPLSADFELVNYGALSIDAGRFPLYALKNQWQPGLPLALV TGGVHGYETSGVQGALDFLHQDAKDYKGKVNLLVVPCVSPWGYEIINRWNPKAVDPNRSFVENSPSEESAALLKLVAPHQ SDFVLHIDLHETTDTDETEFRPALAARDGKDYEPDVIPDGFYLVGDSDNPQEAFQKAIIDAVEKVTHIAPPDEKGNIIGS PVVQHGVINYPVKKLGLCAGITDATYTTTTEVYPDSPKATAEECNAAQVAAIRAALDFMLANR
Sequences:
>Translated_303_residues MTAPYPIGTPGSPWNDADKQAWFKVQTVKRSYQDEVLSRVLPLSADFELVNYGALSIDAGRFPLYALKNQWQPGLPLALV TGGVHGYETSGVQGALDFLHQDAKDYKGKVNLLVVPCVSPWGYEIINRWNPKAVDPNRSFVENSPSEESAALLKLVAPHQ SDFVLHIDLHETTDTDETEFRPALAARDGKDYEPDVIPDGFYLVGDSDNPQEAFQKAIIDAVEKVTHIAPPDEKGNIIGS PVVQHGVINYPVKKLGLCAGITDATYTTTTEVYPDSPKATAEECNAAQVAAIRAALDFMLANR >Mature_302_residues TAPYPIGTPGSPWNDADKQAWFKVQTVKRSYQDEVLSRVLPLSADFELVNYGALSIDAGRFPLYALKNQWQPGLPLALVT GGVHGYETSGVQGALDFLHQDAKDYKGKVNLLVVPCVSPWGYEIINRWNPKAVDPNRSFVENSPSEESAALLKLVAPHQS DFVLHIDLHETTDTDETEFRPALAARDGKDYEPDVIPDGFYLVGDSDNPQEAFQKAIIDAVEKVTHIAPPDEKGNIIGSP VVQHGVINYPVKKLGLCAGITDATYTTTTEVYPDSPKATAEECNAAQVAAIRAALDFMLANR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 33107; Mature: 32976
Theoretical pI: Translated: 4.54; Mature: 4.54
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 0.3 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTAPYPIGTPGSPWNDADKQAWFKVQTVKRSYQDEVLSRVLPLSADFELVNYGALSIDAG CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCEEEECCC RFPLYALKNQWQPGLPLALVTGGVHGYETSGVQGALDFLHQDAKDYKGKVNLLVVPCVSP CCCHHHHHCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCEEEEEEEECCCC WGYEIINRWNPKAVDPNRSFVENSPSEESAALLKLVAPHQSDFVLHIDLHETTDTDETEF CCHHHHHCCCCCCCCCCCHHHCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCHHH RPALAARDGKDYEPDVIPDGFYLVGDSDNPQEAFQKAIIDAVEKVTHIAPPDEKGNIIGS CHHHHCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC PVVQHGVINYPVKKLGLCAGITDATYTTTTEVYPDSPKATAEECNAAQVAAIRAALDFML HHHHCCCCCCCHHHHHHHCCCCCCCEEEEEEECCCCCCCHHHHCCHHHHHHHHHHHHHHH ANR CCC >Mature Secondary Structure TAPYPIGTPGSPWNDADKQAWFKVQTVKRSYQDEVLSRVLPLSADFELVNYGALSIDAG CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCEEEECCC RFPLYALKNQWQPGLPLALVTGGVHGYETSGVQGALDFLHQDAKDYKGKVNLLVVPCVSP CCCHHHHHCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCEEEEEEEECCCC WGYEIINRWNPKAVDPNRSFVENSPSEESAALLKLVAPHQSDFVLHIDLHETTDTDETEF CCHHHHHCCCCCCCCCCCHHHCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCHHH RPALAARDGKDYEPDVIPDGFYLVGDSDNPQEAFQKAIIDAVEKVTHIAPPDEKGNIIGS CHHHHCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC PVVQHGVINYPVKKLGLCAGITDATYTTTTEVYPDSPKATAEECNAAQVAAIRAALDFML HHHHCCCCCCCHHHHHHHCCCCCCCEEEEEEECCCCCCCHHHHCCHHHHHHHHHHHHHHH ANR CCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA