Click here to switch to the map view.

The map label for this gene is scpB [H]

Identifier: 119775260

GI number: 119775260

Start: 2570694

End: 2571290

Strand: Reverse

Name: scpB [H]

Synonym: Sama_2125

Alternate gene names: 119775260

Gene position: 2571290-2570694 (Counterclockwise)

Preceding gene: 119775261

Following gene: 119775259

Centisome position: 59.71

GC content: 51.93

Gene sequence:

>597_bases
ATGGCGCAGATTAGTCACTTACAGCTGAAACAATTGATAGAGGCTTGCCTGTTTGTTCAGCAAAAGCCGATGACCATCAA
AGCATTGCGAGAAGGCGTGCTGGCGCCTTTTGCCGTATCACGGGAAAGGATCAGTACCGTTGTTGCCGAGCTGATGGTCG
ATTATCAGGAACGAGGGGTCAATCTGGTGAAAGTGGCGGGCGGATACCGCTTCCAGACCCAGGAAACCCTGAACCCTTAC
CTGCAGACCCTGTGGCAGGAAAAGGCGCCCAAGTATTCGCGGGCAACCCTGGAAACCCTGGCGGTGATTGCATATCGCCA
ACCTGTGACCCGGGGTGATATTGAGCAGGTAAGGGGTGTGGCACTTGGAAGCCACATCCTGAAAACCTTATCTGATCGTC
GATGGATCAGAGTGGTGGGGCATAAAGAGGTTCCGGGTCGTCCGGCACTTTACGCCACCACTTCAGAATTTTTGGCCTAT
TTTGGCTTGGATAATCTGGCGTCATTACCGGCGCTGGCGGATCTGGAGTCATTGGATGCGTTATTTGGCAAACAAACTGA
ATTACCAAATGCGCAGGAAGAATTAACTCATGAGTGA

Upstream 100 bases:

>100_bases
TGGTGGTCAGTTTTCTTGCGCTGATGGAACTGGTGAAGGAAACCCTGGTTGAGCTGTACCAGGCCGAGCCCCTCAGCGGC
ATTTACGTGAAGGCGACCTG

Downstream 100 bases:

>100_bases
AAAGTTGCAGAAAGTCTTGGCCCGTGCAGGCCATGGCTCCCGTCGTGAGATGGAGGCATGGATTGCTGCAGGACGAGTGA
GTATCAACGGCGAAATCGCC

Product: putative transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 198; Mature: 197

Protein sequence:

>198_residues
MAQISHLQLKQLIEACLFVQQKPMTIKALREGVLAPFAVSRERISTVVAELMVDYQERGVNLVKVAGGYRFQTQETLNPY
LQTLWQEKAPKYSRATLETLAVIAYRQPVTRGDIEQVRGVALGSHILKTLSDRRWIRVVGHKEVPGRPALYATTSEFLAY
FGLDNLASLPALADLESLDALFGKQTELPNAQEELTHE

Sequences:

>Translated_198_residues
MAQISHLQLKQLIEACLFVQQKPMTIKALREGVLAPFAVSRERISTVVAELMVDYQERGVNLVKVAGGYRFQTQETLNPY
LQTLWQEKAPKYSRATLETLAVIAYRQPVTRGDIEQVRGVALGSHILKTLSDRRWIRVVGHKEVPGRPALYATTSEFLAY
FGLDNLASLPALADLESLDALFGKQTELPNAQEELTHE
>Mature_197_residues
AQISHLQLKQLIEACLFVQQKPMTIKALREGVLAPFAVSRERISTVVAELMVDYQERGVNLVKVAGGYRFQTQETLNPYL
QTLWQEKAPKYSRATLETLAVIAYRQPVTRGDIEQVRGVALGSHILKTLSDRRWIRVVGHKEVPGRPALYATTSEFLAYF
GLDNLASLPALADLESLDALFGKQTELPNAQEELTHE

Specific function: May participate in chromosomal partitioning during cell division (Potential) [H]

COG id: COG1386

COG function: function code K; Predicted transcriptional regulator containing the HTH domain

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the scpB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005234
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04079 DUF387 [H]

EC number: NA

Molecular weight: Translated: 22220; Mature: 22089

Theoretical pI: Translated: 7.66; Mature: 7.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAQISHLQLKQLIEACLFVQQKPMTIKALREGVLAPFAVSRERISTVVAELMVDYQERGV
CCCCHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
NLVKVAGGYRFQTQETLNPYLQTLWQEKAPKYSRATLETLAVIAYRQPVTRGDIEQVRGV
EEEEECCCCEECCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
ALGSHILKTLSDRRWIRVVGHKEVPGRPALYATTSEFLAYFGLDNLASLPALADLESLDA
HHHHHHHHHHCCCCEEEEECCCCCCCCCCEEHHHHHHHHHHCCHHHHHCCHHHHHHHHHH
LFGKQTELPNAQEELTHE
HHCCCCCCCCHHHHHCCC
>Mature Secondary Structure 
AQISHLQLKQLIEACLFVQQKPMTIKALREGVLAPFAVSRERISTVVAELMVDYQERGV
CCCHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
NLVKVAGGYRFQTQETLNPYLQTLWQEKAPKYSRATLETLAVIAYRQPVTRGDIEQVRGV
EEEEECCCCEECCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
ALGSHILKTLSDRRWIRVVGHKEVPGRPALYATTSEFLAYFGLDNLASLPALADLESLDA
HHHHHHHHHHCCCCEEEEECCCCCCCCCCEEHHHHHHHHHHCCHHHHHCCHHHHHHHHHH
LFGKQTELPNAQEELTHE
HHCCCCCCCCHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12704232 [H]