| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119775252
Identifier: 119775252
GI number: 119775252
Start: 2560706
End: 2561896
Strand: Direct
Name: 119775252
Synonym: Sama_2117
Alternate gene names: NA
Gene position: 2560706-2561896 (Clockwise)
Preceding gene: 119775251
Following gene: 119775256
Centisome position: 59.47
GC content: 56.42
Gene sequence:
>1191_bases ATGTCGAATCCAGGATTGCGTTCTGCACTGCTGATGCTGCAACCCAAACTGCCGTTACTTTTACTTGTGGCGCTCACGGC CTGTGGTGGTGAAGGTGAGAGCACAGCGCCCACAGCGCCGCCCTCAATTGTCGTAACGCCGCCTGCCACTTCGGTGTGCG ACAACAATAATGGCAGCATCAATCATGAGGCCCTGATGAGCACAAACTGTGCGCGCTTGTCTGACTACCGGCTTTTCAGC GACAGCCGCAACCCGGCTCTGGCACCCCATACGCCGGGTGTGGCCTACCAGCTCGCCAGTGAGCTTTTTACCGACTATGC CATTAAACGCCGCTTTATCTTCTTACCCGAAAACAAGCCCATGGTGTTACAAGGAGATGCCCTGTCGTTGCCGGTGGGCA CCGTGTTGGTTAAAAGCTTCTTACTGCCTTCAGATACCTCAGACACCAATGTTTCTGCTGCCCGGCTTATCGAGACCCGG CTGCTTATCCACCGCGAGAGTGGATGGACGGCGCTGCCCTATCTGTGGAATGGGGATGAGGCGTACCTTGCCGAAACCGG TGCCGATGTATCCCACAGTATGAATAGCACAAATGACACGCTGAACTTCACCTATCACGTGCCCAGCCGCGCCGAGTGTA AGATTTGCCATCAAAGCGCCCGGAATGGCCTGACCACCATAGCGCCCATAGGTCCCAAACCGCTGCTGCTGAACAAAGCC ATCACCGTTAATGATGAGTCGATTAATCAGCTGACATGGTTTGCATCCCAGGGGCTGCTCACAGGGCTTGGCGAGATTGA CTCACTGCCACAGACCTTTGCCATTGGGGATGAGCAGCAAAACCTTACCGCGCGGGTGAAAGGCTATCTCGATGTGAACT GTGCCCATTGCCACAAGGCCGACGGCTTTGCCAGCGTATCGGGACTCAGGCTCGGGTTCGAAACCGATCATCACAGCTAT CAGTACGGAATTTGTAAGCAGCCGCCCGGTTGGGATGGCGGCGAGCGGGGGCTTTCCTACGACATAGTGCCGGGCAACGG CGACCACTCGATTCTGGTCTATCGACAGACGCTTTCAGCGGCCAAAGACCGCATGCCGCCAGTGGGACGAGCTTTGGTGC ACAGTGAAGCCGTAACGCAGATCAGTCGCTGGATAGACTTGATGGCCCCGTCGGTGGGTAACTGTCAGTAG
Upstream 100 bases:
>100_bases CCCTTATCCATGAATGGATAAAACGCCTGCCTGCGGCAGCCTGCTCCAACTGATGTCACATGGCCGGGGAAACCCGGCCT TTTCTTAACAGGTACCCAAG
Downstream 100 bases:
>100_bases TGGGGTAACCGGCAACAAGCCGCTGAAACTTCCCCGGCGGCGCCCCCAACCAATGCTTGAAACTCGCCCGGAAATGGCTA ACGTCGGTAAAGCCAAGGGA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 396; Mature: 395
Protein sequence:
>396_residues MSNPGLRSALLMLQPKLPLLLLVALTACGGEGESTAPTAPPSIVVTPPATSVCDNNNGSINHEALMSTNCARLSDYRLFS DSRNPALAPHTPGVAYQLASELFTDYAIKRRFIFLPENKPMVLQGDALSLPVGTVLVKSFLLPSDTSDTNVSAARLIETR LLIHRESGWTALPYLWNGDEAYLAETGADVSHSMNSTNDTLNFTYHVPSRAECKICHQSARNGLTTIAPIGPKPLLLNKA ITVNDESINQLTWFASQGLLTGLGEIDSLPQTFAIGDEQQNLTARVKGYLDVNCAHCHKADGFASVSGLRLGFETDHHSY QYGICKQPPGWDGGERGLSYDIVPGNGDHSILVYRQTLSAAKDRMPPVGRALVHSEAVTQISRWIDLMAPSVGNCQ
Sequences:
>Translated_396_residues MSNPGLRSALLMLQPKLPLLLLVALTACGGEGESTAPTAPPSIVVTPPATSVCDNNNGSINHEALMSTNCARLSDYRLFS DSRNPALAPHTPGVAYQLASELFTDYAIKRRFIFLPENKPMVLQGDALSLPVGTVLVKSFLLPSDTSDTNVSAARLIETR LLIHRESGWTALPYLWNGDEAYLAETGADVSHSMNSTNDTLNFTYHVPSRAECKICHQSARNGLTTIAPIGPKPLLLNKA ITVNDESINQLTWFASQGLLTGLGEIDSLPQTFAIGDEQQNLTARVKGYLDVNCAHCHKADGFASVSGLRLGFETDHHSY QYGICKQPPGWDGGERGLSYDIVPGNGDHSILVYRQTLSAAKDRMPPVGRALVHSEAVTQISRWIDLMAPSVGNCQ >Mature_395_residues SNPGLRSALLMLQPKLPLLLLVALTACGGEGESTAPTAPPSIVVTPPATSVCDNNNGSINHEALMSTNCARLSDYRLFSD SRNPALAPHTPGVAYQLASELFTDYAIKRRFIFLPENKPMVLQGDALSLPVGTVLVKSFLLPSDTSDTNVSAARLIETRL LIHRESGWTALPYLWNGDEAYLAETGADVSHSMNSTNDTLNFTYHVPSRAECKICHQSARNGLTTIAPIGPKPLLLNKAI TVNDESINQLTWFASQGLLTGLGEIDSLPQTFAIGDEQQNLTARVKGYLDVNCAHCHKADGFASVSGLRLGFETDHHSYQ YGICKQPPGWDGGERGLSYDIVPGNGDHSILVYRQTLSAAKDRMPPVGRALVHSEAVTQISRWIDLMAPSVGNCQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 42764; Mature: 42633
Theoretical pI: Translated: 6.23; Mature: 6.23
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.3 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 2.3 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSNPGLRSALLMLQPKLPLLLLVALTACGGEGESTAPTAPPSIVVTPPATSVCDNNNGSI CCCCCHHHHHHEECCCCHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCHHCCCCCCCC NHEALMSTNCARLSDYRLFSDSRNPALAPHTPGVAYQLASELFTDYAIKRRFIFLPENKP CHHHHHCCCCHHHHCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHEEEEEECCCCC MVLQGDALSLPVGTVLVKSFLLPSDTSDTNVSAARLIETRLLIHRESGWTALPYLWNGDE EEEECCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHEEEEEECCCCEECCEEECCCE AYLAETGADVSHSMNSTNDTLNFTYHVPSRAECKICHQSARNGLTTIAPIGPKPLLLNKA EEEEECCCCHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHCCCEEEECCCCCCEEEEEE ITVNDESINQLTWFASQGLLTGLGEIDSLPQTFAIGDEQQNLTARVKGYLDVNCAHCHKA EEECCCCCHHEEHHHHCCHHHCCHHHHCCCCEEECCCCCCCCEEEEEEEEECCHHHCCCC DGFASVSGLRLGFETDHHSYQYGICKQPPGWDGGERGLSYDIVPGNGDHSILVYRQTLSA CCCCEECEEEEEEECCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCCEEEEEHHHHHH AKDRMPPVGRALVHSEAVTQISRWIDLMAPSVGNCQ HHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC >Mature Secondary Structure SNPGLRSALLMLQPKLPLLLLVALTACGGEGESTAPTAPPSIVVTPPATSVCDNNNGSI CCCCHHHHHHEECCCCHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCHHCCCCCCCC NHEALMSTNCARLSDYRLFSDSRNPALAPHTPGVAYQLASELFTDYAIKRRFIFLPENKP CHHHHHCCCCHHHHCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHEEEEEECCCCC MVLQGDALSLPVGTVLVKSFLLPSDTSDTNVSAARLIETRLLIHRESGWTALPYLWNGDE EEEECCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHEEEEEECCCCEECCEEECCCE AYLAETGADVSHSMNSTNDTLNFTYHVPSRAECKICHQSARNGLTTIAPIGPKPLLLNKA EEEEECCCCHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHCCCEEEECCCCCCEEEEEE ITVNDESINQLTWFASQGLLTGLGEIDSLPQTFAIGDEQQNLTARVKGYLDVNCAHCHKA EEECCCCCHHEEHHHHCCHHHCCHHHHCCCCEEECCCCCCCCEEEEEEEEECCHHHCCCC DGFASVSGLRLGFETDHHSYQYGICKQPPGWDGGERGLSYDIVPGNGDHSILVYRQTLSA CCCCEECEEEEEEECCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCCEEEEEHHHHHH AKDRMPPVGRALVHSEAVTQISRWIDLMAPSVGNCQ HHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA