Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

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The map label for this gene is 119775251

Identifier: 119775251

GI number: 119775251

Start: 2558010

End: 2560658

Strand: Direct

Name: 119775251

Synonym: Sama_2116

Alternate gene names: NA

Gene position: 2558010-2560658 (Clockwise)

Preceding gene: 119775250

Following gene: 119775252

Centisome position: 59.4

GC content: 55.53

Gene sequence:

>2649_bases
ATGCACAACAAGACTCGAAAGCACTGGCTGCCATCCGCAGTCGCTCTGGCCGTGGCATTGCAACTGGGGGGCTGCTTTTC
TGACAGCGAAGACACCGCACCAACGCCACCGCCACCGGTTGTCACACCGCCCACCTCCGGCGGACCCAGCTTTCCTGAAG
GCGCCATCATGATTGAAGCGGGCGACAACTTAACTACCCGCATTCAGGAAGCCCTGATTAACGCCCAGAGCGGCGATGTG
ATAGTGCTGCCAAAGGGCCGGTTTGAGATCCAGTCTACCCTGCTGTTTGACGGTGATGTGGACGGTGACGGTGCCTTTGC
CAAAAACGTCACCATCATGGGATATGGCATGGACGAAACCGTGCTGGACTTTGCCAATGCCAACTCTGGAGACGGCATCT
TCGTACAAAACGCCATGCAGATCACCATTGCGGATCTGTCTGTTTATGAAGCCAAAAACAACGGCATCAAGCTGAAAAAC
ACCAATGGCATCATACTGCGTAAAGTTGGCGCCGTTTGGGAAGGCGCGCTGGACAAGGACAACGGCGCCTATGGACTCTA
CCCGGTAGAGTGCGAAAACATTCTGATTGAAGACAGCTACGTACGTGGCAGCGCCGATGCCGGTATCTACGTTGGCCAAT
CCGAATATATCGTCGTGCGCAACAACATCGCCAAAGAAAACGTGGCCGGTATCGAGATTGAAAACAGCCGCTATGCCGAC
GTTTACAACAACGAAGCCATGGGTAACACCGGCGGTATTCTGGTATTTGACCTGCCCATCAATAACCACAGATACGGCTC
CAGCGTGAGGATTTTTGACAACAAGGTCTACGACAACAATACCCACAACTTTGCCAATGCCTCAGCCAATCCAGCCGGCG
TACACATAGTGCCGCCCGGCACCGGTGTGATTATTCTCTCCACCAACGACGTGGAGATTTTCAATAACCAAATCACCAAT
CACGACACCCTTGGCCTGACGGTATCGAGCTTCTTCATTGCCGAACCCGAAATCAGCGACTTTGTTGCCAACTACGGCCA
GCCCGGTCAGTCCATCGAAGATGGCTGGCGCCCTGTACCCCGTAATATTTATGTGCATGACAACGAGATAAGCGGCTACG
GCGCCAAACCCAACGGCTACCTCATCACCGACATCATCAATGCCTACGTGTTGACCCACGGCGCCATGCCCGGGATCCTC
TATGACGGTTTGGGTGAACTGCTCGCCAACAATGGCACCGCCGCCTATCTGGGACTCAGGGAAATGCCTTTCGCTGCGGA
CGGCAGTGACAATGTCTGTATGCAAAATAACGGCGATGTCAGCATGGGGCAGCTTTACAGCAACAGCAATACCGACATGA
GCATTGCCGATGTGCTGTACGAGAAGACCCAAACCAATCTGCTTAAATGTGCCCAGGTGAGCCTGCCGGTGCACACAGTC
ACCTTTGGCGAACAAATTTTCGGTTGCGGCGTGGATGACGATACCGCAGGCTGCGATGGCGGCAACCTGATTGGTGGTGG
TGGCACCATTGGCGACGGTGACGGCGGCATCATTGGCGATGGCGATCAGGCACTGTGCGACAGCACGGCCTCCGGTGTGA
ACTGGAATGCCCTGGCCAAAGCCAACTGCCCCAAGCTGTCTGACTATGGGCTGTTTGCCGATGAAACCGACCCCACTCAA
AATGCCAATGGCGGCATGCCCTATGATTTGAACACTCAGCTGTTCACCGACTACGCCAGCAAATACCGTTTCGTGTTTAT
GCCGGATGGTACCAAGGCCCAATACAGTGAAAACGAAGCCTTTGATTTCCCGGTGGGTACAGTGATATCCAAAACCTTCG
CCCTGCCTGCTGACACCAGCAAGCGCGGCATCGCCAATGAGGATTTGATTGAGACCCGCCTGCTCATCAAGCGTGCCAGC
GGCTGGACCGCCCTGCCCTATGTGTGGAATGCCCAAAAGAGCGATGCTGTGCTGACCAAACCCGGCGCCATTCAGGCCAA
GACGGTCATGCACAAGGGCGAAGCCAAAACCTTTGACTATGTCGTGCCTTCCATCAACCAGTGTAAACAGTGTCATCAAT
TCAAGGCCGAGGGCGACGAGTTCCCACGCTTTGTGCCCATAGGACCAAAGGCACGTTTCCTTAACGGTGACTTTGCCTAT
GCCGACGCCACAGTGAACCAACTCAGTCGTTGGCAGAGCGCCGGAATACTGGAAGGCCTGCCTGAACTGTCCAGCGTACC
CAAGGTCCCGGCCTTCCACGATGGTGATGAAGCTGGCCTCGCAGCACTTGACGATGCCAGCCTGATGCAAACCGCCAAGG
GATATCTGGATATCAACTGCGCCCACTGTCACCGCCCCGAAGGCAACGCCTCCAACACAGGACTCAAGCTTGAGTACTGG
CGCGGTTATGGCGATGACAATGGTTACTCCCACGGCACCTGTAAGCAGCCGGTGGCCTACGGTGGCGGCAGCCTGGGCTA
TGACGTGGTGCCCACAAAACCAGACAGCTCCATCATGCATTTCAGGATGGCAAGCACTGAGCCCGGGGATCGCATGCCAG
AGATTGGTCGCAGCCTCGCCCATGAGGAAGGTGTCGCCCTTATCCATGAATGGATAAAACGCCTGCCTGCGGCAGCCTGC
TCCAACTGA

Upstream 100 bases:

>100_bases
TCAAAGCAATCCCAAGCAGGTTGGCCGGATTTCTCATTGCCTAATGTGTACGTTCGTGCAAGGTTTCTTAACAGATATAT
AACAATAACGAGGAACACTC

Downstream 100 bases:

>100_bases
TGTCACATGGCCGGGGAAACCCGGCCTTTTCTTAACAGGTACCCAAGATGTCGAATCCAGGATTGCGTTCTGCACTGCTG
ATGCTGCAACCCAAACTGCC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 882; Mature: 882

Protein sequence:

>882_residues
MHNKTRKHWLPSAVALAVALQLGGCFSDSEDTAPTPPPPVVTPPTSGGPSFPEGAIMIEAGDNLTTRIQEALINAQSGDV
IVLPKGRFEIQSTLLFDGDVDGDGAFAKNVTIMGYGMDETVLDFANANSGDGIFVQNAMQITIADLSVYEAKNNGIKLKN
TNGIILRKVGAVWEGALDKDNGAYGLYPVECENILIEDSYVRGSADAGIYVGQSEYIVVRNNIAKENVAGIEIENSRYAD
VYNNEAMGNTGGILVFDLPINNHRYGSSVRIFDNKVYDNNTHNFANASANPAGVHIVPPGTGVIILSTNDVEIFNNQITN
HDTLGLTVSSFFIAEPEISDFVANYGQPGQSIEDGWRPVPRNIYVHDNEISGYGAKPNGYLITDIINAYVLTHGAMPGIL
YDGLGELLANNGTAAYLGLREMPFAADGSDNVCMQNNGDVSMGQLYSNSNTDMSIADVLYEKTQTNLLKCAQVSLPVHTV
TFGEQIFGCGVDDDTAGCDGGNLIGGGGTIGDGDGGIIGDGDQALCDSTASGVNWNALAKANCPKLSDYGLFADETDPTQ
NANGGMPYDLNTQLFTDYASKYRFVFMPDGTKAQYSENEAFDFPVGTVISKTFALPADTSKRGIANEDLIETRLLIKRAS
GWTALPYVWNAQKSDAVLTKPGAIQAKTVMHKGEAKTFDYVVPSINQCKQCHQFKAEGDEFPRFVPIGPKARFLNGDFAY
ADATVNQLSRWQSAGILEGLPELSSVPKVPAFHDGDEAGLAALDDASLMQTAKGYLDINCAHCHRPEGNASNTGLKLEYW
RGYGDDNGYSHGTCKQPVAYGGGSLGYDVVPTKPDSSIMHFRMASTEPGDRMPEIGRSLAHEEGVALIHEWIKRLPAAAC
SN

Sequences:

>Translated_882_residues
MHNKTRKHWLPSAVALAVALQLGGCFSDSEDTAPTPPPPVVTPPTSGGPSFPEGAIMIEAGDNLTTRIQEALINAQSGDV
IVLPKGRFEIQSTLLFDGDVDGDGAFAKNVTIMGYGMDETVLDFANANSGDGIFVQNAMQITIADLSVYEAKNNGIKLKN
TNGIILRKVGAVWEGALDKDNGAYGLYPVECENILIEDSYVRGSADAGIYVGQSEYIVVRNNIAKENVAGIEIENSRYAD
VYNNEAMGNTGGILVFDLPINNHRYGSSVRIFDNKVYDNNTHNFANASANPAGVHIVPPGTGVIILSTNDVEIFNNQITN
HDTLGLTVSSFFIAEPEISDFVANYGQPGQSIEDGWRPVPRNIYVHDNEISGYGAKPNGYLITDIINAYVLTHGAMPGIL
YDGLGELLANNGTAAYLGLREMPFAADGSDNVCMQNNGDVSMGQLYSNSNTDMSIADVLYEKTQTNLLKCAQVSLPVHTV
TFGEQIFGCGVDDDTAGCDGGNLIGGGGTIGDGDGGIIGDGDQALCDSTASGVNWNALAKANCPKLSDYGLFADETDPTQ
NANGGMPYDLNTQLFTDYASKYRFVFMPDGTKAQYSENEAFDFPVGTVISKTFALPADTSKRGIANEDLIETRLLIKRAS
GWTALPYVWNAQKSDAVLTKPGAIQAKTVMHKGEAKTFDYVVPSINQCKQCHQFKAEGDEFPRFVPIGPKARFLNGDFAY
ADATVNQLSRWQSAGILEGLPELSSVPKVPAFHDGDEAGLAALDDASLMQTAKGYLDINCAHCHRPEGNASNTGLKLEYW
RGYGDDNGYSHGTCKQPVAYGGGSLGYDVVPTKPDSSIMHFRMASTEPGDRMPEIGRSLAHEEGVALIHEWIKRLPAAAC
SN
>Mature_882_residues
MHNKTRKHWLPSAVALAVALQLGGCFSDSEDTAPTPPPPVVTPPTSGGPSFPEGAIMIEAGDNLTTRIQEALINAQSGDV
IVLPKGRFEIQSTLLFDGDVDGDGAFAKNVTIMGYGMDETVLDFANANSGDGIFVQNAMQITIADLSVYEAKNNGIKLKN
TNGIILRKVGAVWEGALDKDNGAYGLYPVECENILIEDSYVRGSADAGIYVGQSEYIVVRNNIAKENVAGIEIENSRYAD
VYNNEAMGNTGGILVFDLPINNHRYGSSVRIFDNKVYDNNTHNFANASANPAGVHIVPPGTGVIILSTNDVEIFNNQITN
HDTLGLTVSSFFIAEPEISDFVANYGQPGQSIEDGWRPVPRNIYVHDNEISGYGAKPNGYLITDIINAYVLTHGAMPGIL
YDGLGELLANNGTAAYLGLREMPFAADGSDNVCMQNNGDVSMGQLYSNSNTDMSIADVLYEKTQTNLLKCAQVSLPVHTV
TFGEQIFGCGVDDDTAGCDGGNLIGGGGTIGDGDGGIIGDGDQALCDSTASGVNWNALAKANCPKLSDYGLFADETDPTQ
NANGGMPYDLNTQLFTDYASKYRFVFMPDGTKAQYSENEAFDFPVGTVISKTFALPADTSKRGIANEDLIETRLLIKRAS
GWTALPYVWNAQKSDAVLTKPGAIQAKTVMHKGEAKTFDYVVPSINQCKQCHQFKAEGDEFPRFVPIGPKARFLNGDFAY
ADATVNQLSRWQSAGILEGLPELSSVPKVPAFHDGDEAGLAALDDASLMQTAKGYLDINCAHCHRPEGNASNTGLKLEYW
RGYGDDNGYSHGTCKQPVAYGGGSLGYDVVPTKPDSSIMHFRMASTEPGDRMPEIGRSLAHEEGVALIHEWIKRLPAAAC
SN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 94512; Mature: 94512

Theoretical pI: Translated: 4.40; Mature: 4.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHNKTRKHWLPSAVALAVALQLGGCFSDSEDTAPTPPPPVVTPPTSGGPSFPEGAIMIEA
CCCCCCHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCEEEEEC
GDNLTTRIQEALINAQSGDVIVLPKGRFEIQSTLLFDGDVDGDGAFAKNVTIMGYGMDET
CCCHHHHHHHHHHCCCCCCEEEEECCCEEEEEEEEECCCCCCCCCEECCEEEEEECCCHH
VLDFANANSGDGIFVQNAMQITIADLSVYEAKNNGIKLKNTNGIILRKVGAVWEGALDKD
HHHHCCCCCCCEEEEECEEEEEEEEEEEEEECCCCEEEECCCCEEEEECCHHHCCCCCCC
NGAYGLYPVECENILIEDSYVRGSADAGIYVGQSEYIVVRNNIAKENVAGIEIENSRYAD
CCEEEEEEECCCEEEEECCEECCCCCCCEEECCCCEEEEECCCCCCCCCEEEECCCEEEE
VYNNEAMGNTGGILVFDLPINNHRYGSSVRIFDNKVYDNNTHNFANASANPAGVHIVPPG
CCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEECEEECCCCCCCCCCCCCCCEEEEECCC
TGVIILSTNDVEIFNNQITNHDTLGLTVSSFFIAEPEISDFVANYGQPGQSIEDGWRPVP
CEEEEEECCCEEEECCCCCCCCEEEEEEEEEEEECCCHHHHHHHCCCCCCCHHHCCCCCC
RNIYVHDNEISGYGAKPNGYLITDIINAYVLTHGAMPGILYDGLGELLANNGTAAYLGLR
CEEEEECCCCCCCCCCCCCEEHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCEEEEEHC
EMPFAADGSDNVCMQNNGDVSMGQLYSNSNTDMSIADVLYEKTQTNLLKCAQVSLPVHTV
CCCCCCCCCCCEEEECCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHEECCCEEEE
TFGEQIFGCGVDDDTAGCDGGNLIGGGGTIGDGDGGIIGDGDQALCDSTASGVNWNALAK
EECCHHEECCCCCCCCCCCCCCEECCCCCCCCCCCCEECCCCHHHHCCCCCCCCCCEEEC
ANCPKLSDYGLFADETDPTQNANGGMPYDLNTQLFTDYASKYRFVFMPDGTKAQYSENEA
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCEEEEEECCCCCCCCCCCCC
FDFPVGTVISKTFALPADTSKRGIANEDLIETRLLIKRASGWTALPYVWNAQKSDAVLTK
CCCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHEECCCCEECCEEECCCCCCEEEEC
PGAIQAKTVMHKGEAKTFDYVVPSINQCKQCHQFKAEGDEFPRFVPIGPKARFLNGDFAY
CCCCEEHHEEECCCCCEEEEECCCHHHHHHHHHHHCCCCCCCCEEECCCCCEEECCCEEE
ADATVNQLSRWQSAGILEGLPELSSVPKVPAFHDGDEAGLAALDDASLMQTAKGYLDINC
CHHHHHHHHHHHHCCHHHCCHHHHCCCCCCCCCCCCCCCEEEECCHHHHHHCCCCEEEEE
AHCHRPEGNASNTGLKLEYWRGYGDDNGYSHGTCKQPVAYGGGSLGYDVVPTKPDSSIMH
HCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCHHCCCCCCCCCEECCCCCCCEEE
FRMASTEPGDRMPEIGRSLAHEEGVALIHEWIKRLPAAACSN
EEECCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHCCHHHCCC
>Mature Secondary Structure
MHNKTRKHWLPSAVALAVALQLGGCFSDSEDTAPTPPPPVVTPPTSGGPSFPEGAIMIEA
CCCCCCHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCEEEEEC
GDNLTTRIQEALINAQSGDVIVLPKGRFEIQSTLLFDGDVDGDGAFAKNVTIMGYGMDET
CCCHHHHHHHHHHCCCCCCEEEEECCCEEEEEEEEECCCCCCCCCEECCEEEEEECCCHH
VLDFANANSGDGIFVQNAMQITIADLSVYEAKNNGIKLKNTNGIILRKVGAVWEGALDKD
HHHHCCCCCCCEEEEECEEEEEEEEEEEEEECCCCEEEECCCCEEEEECCHHHCCCCCCC
NGAYGLYPVECENILIEDSYVRGSADAGIYVGQSEYIVVRNNIAKENVAGIEIENSRYAD
CCEEEEEEECCCEEEEECCEECCCCCCCEEECCCCEEEEECCCCCCCCCEEEECCCEEEE
VYNNEAMGNTGGILVFDLPINNHRYGSSVRIFDNKVYDNNTHNFANASANPAGVHIVPPG
CCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEECEEECCCCCCCCCCCCCCCEEEEECCC
TGVIILSTNDVEIFNNQITNHDTLGLTVSSFFIAEPEISDFVANYGQPGQSIEDGWRPVP
CEEEEEECCCEEEECCCCCCCCEEEEEEEEEEEECCCHHHHHHHCCCCCCCHHHCCCCCC
RNIYVHDNEISGYGAKPNGYLITDIINAYVLTHGAMPGILYDGLGELLANNGTAAYLGLR
CEEEEECCCCCCCCCCCCCEEHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCEEEEEHC
EMPFAADGSDNVCMQNNGDVSMGQLYSNSNTDMSIADVLYEKTQTNLLKCAQVSLPVHTV
CCCCCCCCCCCEEEECCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHEECCCEEEE
TFGEQIFGCGVDDDTAGCDGGNLIGGGGTIGDGDGGIIGDGDQALCDSTASGVNWNALAK
EECCHHEECCCCCCCCCCCCCCEECCCCCCCCCCCCEECCCCHHHHCCCCCCCCCCEEEC
ANCPKLSDYGLFADETDPTQNANGGMPYDLNTQLFTDYASKYRFVFMPDGTKAQYSENEA
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCEEEEEECCCCCCCCCCCCC
FDFPVGTVISKTFALPADTSKRGIANEDLIETRLLIKRASGWTALPYVWNAQKSDAVLTK
CCCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHEECCCCEECCEEECCCCCCEEEEC
PGAIQAKTVMHKGEAKTFDYVVPSINQCKQCHQFKAEGDEFPRFVPIGPKARFLNGDFAY
CCCCEEHHEEECCCCCEEEEECCCHHHHHHHHHHHCCCCCCCCEEECCCCCEEECCCEEE
ADATVNQLSRWQSAGILEGLPELSSVPKVPAFHDGDEAGLAALDDASLMQTAKGYLDINC
CHHHHHHHHHHHHCCHHHCCHHHHCCCCCCCCCCCCCCCEEEECCHHHHHHCCCCEEEEE
AHCHRPEGNASNTGLKLEYWRGYGDDNGYSHGTCKQPVAYGGGSLGYDVVPTKPDSSIMH
HCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCHHCCCCCCCCCEECCCCCCCEEE
FRMASTEPGDRMPEIGRSLAHEEGVALIHEWIKRLPAAACSN
EEECCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA