| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119775251
Identifier: 119775251
GI number: 119775251
Start: 2558010
End: 2560658
Strand: Direct
Name: 119775251
Synonym: Sama_2116
Alternate gene names: NA
Gene position: 2558010-2560658 (Clockwise)
Preceding gene: 119775250
Following gene: 119775252
Centisome position: 59.4
GC content: 55.53
Gene sequence:
>2649_bases ATGCACAACAAGACTCGAAAGCACTGGCTGCCATCCGCAGTCGCTCTGGCCGTGGCATTGCAACTGGGGGGCTGCTTTTC TGACAGCGAAGACACCGCACCAACGCCACCGCCACCGGTTGTCACACCGCCCACCTCCGGCGGACCCAGCTTTCCTGAAG GCGCCATCATGATTGAAGCGGGCGACAACTTAACTACCCGCATTCAGGAAGCCCTGATTAACGCCCAGAGCGGCGATGTG ATAGTGCTGCCAAAGGGCCGGTTTGAGATCCAGTCTACCCTGCTGTTTGACGGTGATGTGGACGGTGACGGTGCCTTTGC CAAAAACGTCACCATCATGGGATATGGCATGGACGAAACCGTGCTGGACTTTGCCAATGCCAACTCTGGAGACGGCATCT TCGTACAAAACGCCATGCAGATCACCATTGCGGATCTGTCTGTTTATGAAGCCAAAAACAACGGCATCAAGCTGAAAAAC ACCAATGGCATCATACTGCGTAAAGTTGGCGCCGTTTGGGAAGGCGCGCTGGACAAGGACAACGGCGCCTATGGACTCTA CCCGGTAGAGTGCGAAAACATTCTGATTGAAGACAGCTACGTACGTGGCAGCGCCGATGCCGGTATCTACGTTGGCCAAT CCGAATATATCGTCGTGCGCAACAACATCGCCAAAGAAAACGTGGCCGGTATCGAGATTGAAAACAGCCGCTATGCCGAC GTTTACAACAACGAAGCCATGGGTAACACCGGCGGTATTCTGGTATTTGACCTGCCCATCAATAACCACAGATACGGCTC CAGCGTGAGGATTTTTGACAACAAGGTCTACGACAACAATACCCACAACTTTGCCAATGCCTCAGCCAATCCAGCCGGCG TACACATAGTGCCGCCCGGCACCGGTGTGATTATTCTCTCCACCAACGACGTGGAGATTTTCAATAACCAAATCACCAAT CACGACACCCTTGGCCTGACGGTATCGAGCTTCTTCATTGCCGAACCCGAAATCAGCGACTTTGTTGCCAACTACGGCCA GCCCGGTCAGTCCATCGAAGATGGCTGGCGCCCTGTACCCCGTAATATTTATGTGCATGACAACGAGATAAGCGGCTACG GCGCCAAACCCAACGGCTACCTCATCACCGACATCATCAATGCCTACGTGTTGACCCACGGCGCCATGCCCGGGATCCTC TATGACGGTTTGGGTGAACTGCTCGCCAACAATGGCACCGCCGCCTATCTGGGACTCAGGGAAATGCCTTTCGCTGCGGA CGGCAGTGACAATGTCTGTATGCAAAATAACGGCGATGTCAGCATGGGGCAGCTTTACAGCAACAGCAATACCGACATGA GCATTGCCGATGTGCTGTACGAGAAGACCCAAACCAATCTGCTTAAATGTGCCCAGGTGAGCCTGCCGGTGCACACAGTC ACCTTTGGCGAACAAATTTTCGGTTGCGGCGTGGATGACGATACCGCAGGCTGCGATGGCGGCAACCTGATTGGTGGTGG TGGCACCATTGGCGACGGTGACGGCGGCATCATTGGCGATGGCGATCAGGCACTGTGCGACAGCACGGCCTCCGGTGTGA ACTGGAATGCCCTGGCCAAAGCCAACTGCCCCAAGCTGTCTGACTATGGGCTGTTTGCCGATGAAACCGACCCCACTCAA AATGCCAATGGCGGCATGCCCTATGATTTGAACACTCAGCTGTTCACCGACTACGCCAGCAAATACCGTTTCGTGTTTAT GCCGGATGGTACCAAGGCCCAATACAGTGAAAACGAAGCCTTTGATTTCCCGGTGGGTACAGTGATATCCAAAACCTTCG CCCTGCCTGCTGACACCAGCAAGCGCGGCATCGCCAATGAGGATTTGATTGAGACCCGCCTGCTCATCAAGCGTGCCAGC GGCTGGACCGCCCTGCCCTATGTGTGGAATGCCCAAAAGAGCGATGCTGTGCTGACCAAACCCGGCGCCATTCAGGCCAA GACGGTCATGCACAAGGGCGAAGCCAAAACCTTTGACTATGTCGTGCCTTCCATCAACCAGTGTAAACAGTGTCATCAAT TCAAGGCCGAGGGCGACGAGTTCCCACGCTTTGTGCCCATAGGACCAAAGGCACGTTTCCTTAACGGTGACTTTGCCTAT GCCGACGCCACAGTGAACCAACTCAGTCGTTGGCAGAGCGCCGGAATACTGGAAGGCCTGCCTGAACTGTCCAGCGTACC CAAGGTCCCGGCCTTCCACGATGGTGATGAAGCTGGCCTCGCAGCACTTGACGATGCCAGCCTGATGCAAACCGCCAAGG GATATCTGGATATCAACTGCGCCCACTGTCACCGCCCCGAAGGCAACGCCTCCAACACAGGACTCAAGCTTGAGTACTGG CGCGGTTATGGCGATGACAATGGTTACTCCCACGGCACCTGTAAGCAGCCGGTGGCCTACGGTGGCGGCAGCCTGGGCTA TGACGTGGTGCCCACAAAACCAGACAGCTCCATCATGCATTTCAGGATGGCAAGCACTGAGCCCGGGGATCGCATGCCAG AGATTGGTCGCAGCCTCGCCCATGAGGAAGGTGTCGCCCTTATCCATGAATGGATAAAACGCCTGCCTGCGGCAGCCTGC TCCAACTGA
Upstream 100 bases:
>100_bases TCAAAGCAATCCCAAGCAGGTTGGCCGGATTTCTCATTGCCTAATGTGTACGTTCGTGCAAGGTTTCTTAACAGATATAT AACAATAACGAGGAACACTC
Downstream 100 bases:
>100_bases TGTCACATGGCCGGGGAAACCCGGCCTTTTCTTAACAGGTACCCAAGATGTCGAATCCAGGATTGCGTTCTGCACTGCTG ATGCTGCAACCCAAACTGCC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 882; Mature: 882
Protein sequence:
>882_residues MHNKTRKHWLPSAVALAVALQLGGCFSDSEDTAPTPPPPVVTPPTSGGPSFPEGAIMIEAGDNLTTRIQEALINAQSGDV IVLPKGRFEIQSTLLFDGDVDGDGAFAKNVTIMGYGMDETVLDFANANSGDGIFVQNAMQITIADLSVYEAKNNGIKLKN TNGIILRKVGAVWEGALDKDNGAYGLYPVECENILIEDSYVRGSADAGIYVGQSEYIVVRNNIAKENVAGIEIENSRYAD VYNNEAMGNTGGILVFDLPINNHRYGSSVRIFDNKVYDNNTHNFANASANPAGVHIVPPGTGVIILSTNDVEIFNNQITN HDTLGLTVSSFFIAEPEISDFVANYGQPGQSIEDGWRPVPRNIYVHDNEISGYGAKPNGYLITDIINAYVLTHGAMPGIL YDGLGELLANNGTAAYLGLREMPFAADGSDNVCMQNNGDVSMGQLYSNSNTDMSIADVLYEKTQTNLLKCAQVSLPVHTV TFGEQIFGCGVDDDTAGCDGGNLIGGGGTIGDGDGGIIGDGDQALCDSTASGVNWNALAKANCPKLSDYGLFADETDPTQ NANGGMPYDLNTQLFTDYASKYRFVFMPDGTKAQYSENEAFDFPVGTVISKTFALPADTSKRGIANEDLIETRLLIKRAS GWTALPYVWNAQKSDAVLTKPGAIQAKTVMHKGEAKTFDYVVPSINQCKQCHQFKAEGDEFPRFVPIGPKARFLNGDFAY ADATVNQLSRWQSAGILEGLPELSSVPKVPAFHDGDEAGLAALDDASLMQTAKGYLDINCAHCHRPEGNASNTGLKLEYW RGYGDDNGYSHGTCKQPVAYGGGSLGYDVVPTKPDSSIMHFRMASTEPGDRMPEIGRSLAHEEGVALIHEWIKRLPAAAC SN
Sequences:
>Translated_882_residues MHNKTRKHWLPSAVALAVALQLGGCFSDSEDTAPTPPPPVVTPPTSGGPSFPEGAIMIEAGDNLTTRIQEALINAQSGDV IVLPKGRFEIQSTLLFDGDVDGDGAFAKNVTIMGYGMDETVLDFANANSGDGIFVQNAMQITIADLSVYEAKNNGIKLKN TNGIILRKVGAVWEGALDKDNGAYGLYPVECENILIEDSYVRGSADAGIYVGQSEYIVVRNNIAKENVAGIEIENSRYAD VYNNEAMGNTGGILVFDLPINNHRYGSSVRIFDNKVYDNNTHNFANASANPAGVHIVPPGTGVIILSTNDVEIFNNQITN HDTLGLTVSSFFIAEPEISDFVANYGQPGQSIEDGWRPVPRNIYVHDNEISGYGAKPNGYLITDIINAYVLTHGAMPGIL YDGLGELLANNGTAAYLGLREMPFAADGSDNVCMQNNGDVSMGQLYSNSNTDMSIADVLYEKTQTNLLKCAQVSLPVHTV TFGEQIFGCGVDDDTAGCDGGNLIGGGGTIGDGDGGIIGDGDQALCDSTASGVNWNALAKANCPKLSDYGLFADETDPTQ NANGGMPYDLNTQLFTDYASKYRFVFMPDGTKAQYSENEAFDFPVGTVISKTFALPADTSKRGIANEDLIETRLLIKRAS GWTALPYVWNAQKSDAVLTKPGAIQAKTVMHKGEAKTFDYVVPSINQCKQCHQFKAEGDEFPRFVPIGPKARFLNGDFAY ADATVNQLSRWQSAGILEGLPELSSVPKVPAFHDGDEAGLAALDDASLMQTAKGYLDINCAHCHRPEGNASNTGLKLEYW RGYGDDNGYSHGTCKQPVAYGGGSLGYDVVPTKPDSSIMHFRMASTEPGDRMPEIGRSLAHEEGVALIHEWIKRLPAAAC SN >Mature_882_residues MHNKTRKHWLPSAVALAVALQLGGCFSDSEDTAPTPPPPVVTPPTSGGPSFPEGAIMIEAGDNLTTRIQEALINAQSGDV IVLPKGRFEIQSTLLFDGDVDGDGAFAKNVTIMGYGMDETVLDFANANSGDGIFVQNAMQITIADLSVYEAKNNGIKLKN TNGIILRKVGAVWEGALDKDNGAYGLYPVECENILIEDSYVRGSADAGIYVGQSEYIVVRNNIAKENVAGIEIENSRYAD VYNNEAMGNTGGILVFDLPINNHRYGSSVRIFDNKVYDNNTHNFANASANPAGVHIVPPGTGVIILSTNDVEIFNNQITN HDTLGLTVSSFFIAEPEISDFVANYGQPGQSIEDGWRPVPRNIYVHDNEISGYGAKPNGYLITDIINAYVLTHGAMPGIL YDGLGELLANNGTAAYLGLREMPFAADGSDNVCMQNNGDVSMGQLYSNSNTDMSIADVLYEKTQTNLLKCAQVSLPVHTV TFGEQIFGCGVDDDTAGCDGGNLIGGGGTIGDGDGGIIGDGDQALCDSTASGVNWNALAKANCPKLSDYGLFADETDPTQ NANGGMPYDLNTQLFTDYASKYRFVFMPDGTKAQYSENEAFDFPVGTVISKTFALPADTSKRGIANEDLIETRLLIKRAS GWTALPYVWNAQKSDAVLTKPGAIQAKTVMHKGEAKTFDYVVPSINQCKQCHQFKAEGDEFPRFVPIGPKARFLNGDFAY ADATVNQLSRWQSAGILEGLPELSSVPKVPAFHDGDEAGLAALDDASLMQTAKGYLDINCAHCHRPEGNASNTGLKLEYW RGYGDDNGYSHGTCKQPVAYGGGSLGYDVVPTKPDSSIMHFRMASTEPGDRMPEIGRSLAHEEGVALIHEWIKRLPAAAC SN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 94512; Mature: 94512
Theoretical pI: Translated: 4.40; Mature: 4.40
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHNKTRKHWLPSAVALAVALQLGGCFSDSEDTAPTPPPPVVTPPTSGGPSFPEGAIMIEA CCCCCCHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCEEEEEC GDNLTTRIQEALINAQSGDVIVLPKGRFEIQSTLLFDGDVDGDGAFAKNVTIMGYGMDET CCCHHHHHHHHHHCCCCCCEEEEECCCEEEEEEEEECCCCCCCCCEECCEEEEEECCCHH VLDFANANSGDGIFVQNAMQITIADLSVYEAKNNGIKLKNTNGIILRKVGAVWEGALDKD HHHHCCCCCCCEEEEECEEEEEEEEEEEEEECCCCEEEECCCCEEEEECCHHHCCCCCCC NGAYGLYPVECENILIEDSYVRGSADAGIYVGQSEYIVVRNNIAKENVAGIEIENSRYAD CCEEEEEEECCCEEEEECCEECCCCCCCEEECCCCEEEEECCCCCCCCCEEEECCCEEEE VYNNEAMGNTGGILVFDLPINNHRYGSSVRIFDNKVYDNNTHNFANASANPAGVHIVPPG CCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEECEEECCCCCCCCCCCCCCCEEEEECCC TGVIILSTNDVEIFNNQITNHDTLGLTVSSFFIAEPEISDFVANYGQPGQSIEDGWRPVP CEEEEEECCCEEEECCCCCCCCEEEEEEEEEEEECCCHHHHHHHCCCCCCCHHHCCCCCC RNIYVHDNEISGYGAKPNGYLITDIINAYVLTHGAMPGILYDGLGELLANNGTAAYLGLR CEEEEECCCCCCCCCCCCCEEHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCEEEEEHC EMPFAADGSDNVCMQNNGDVSMGQLYSNSNTDMSIADVLYEKTQTNLLKCAQVSLPVHTV CCCCCCCCCCCEEEECCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHEECCCEEEE TFGEQIFGCGVDDDTAGCDGGNLIGGGGTIGDGDGGIIGDGDQALCDSTASGVNWNALAK EECCHHEECCCCCCCCCCCCCCEECCCCCCCCCCCCEECCCCHHHHCCCCCCCCCCEEEC ANCPKLSDYGLFADETDPTQNANGGMPYDLNTQLFTDYASKYRFVFMPDGTKAQYSENEA CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCEEEEEECCCCCCCCCCCCC FDFPVGTVISKTFALPADTSKRGIANEDLIETRLLIKRASGWTALPYVWNAQKSDAVLTK CCCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHEECCCCEECCEEECCCCCCEEEEC PGAIQAKTVMHKGEAKTFDYVVPSINQCKQCHQFKAEGDEFPRFVPIGPKARFLNGDFAY CCCCEEHHEEECCCCCEEEEECCCHHHHHHHHHHHCCCCCCCCEEECCCCCEEECCCEEE ADATVNQLSRWQSAGILEGLPELSSVPKVPAFHDGDEAGLAALDDASLMQTAKGYLDINC CHHHHHHHHHHHHCCHHHCCHHHHCCCCCCCCCCCCCCCEEEECCHHHHHHCCCCEEEEE AHCHRPEGNASNTGLKLEYWRGYGDDNGYSHGTCKQPVAYGGGSLGYDVVPTKPDSSIMH HCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCHHCCCCCCCCCEECCCCCCCEEE FRMASTEPGDRMPEIGRSLAHEEGVALIHEWIKRLPAAACSN EEECCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHCCHHHCCC >Mature Secondary Structure MHNKTRKHWLPSAVALAVALQLGGCFSDSEDTAPTPPPPVVTPPTSGGPSFPEGAIMIEA CCCCCCHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCEEEEEC GDNLTTRIQEALINAQSGDVIVLPKGRFEIQSTLLFDGDVDGDGAFAKNVTIMGYGMDET CCCHHHHHHHHHHCCCCCCEEEEECCCEEEEEEEEECCCCCCCCCEECCEEEEEECCCHH VLDFANANSGDGIFVQNAMQITIADLSVYEAKNNGIKLKNTNGIILRKVGAVWEGALDKD HHHHCCCCCCCEEEEECEEEEEEEEEEEEEECCCCEEEECCCCEEEEECCHHHCCCCCCC NGAYGLYPVECENILIEDSYVRGSADAGIYVGQSEYIVVRNNIAKENVAGIEIENSRYAD CCEEEEEEECCCEEEEECCEECCCCCCCEEECCCCEEEEECCCCCCCCCEEEECCCEEEE VYNNEAMGNTGGILVFDLPINNHRYGSSVRIFDNKVYDNNTHNFANASANPAGVHIVPPG CCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEECEEECCCCCCCCCCCCCCCEEEEECCC TGVIILSTNDVEIFNNQITNHDTLGLTVSSFFIAEPEISDFVANYGQPGQSIEDGWRPVP CEEEEEECCCEEEECCCCCCCCEEEEEEEEEEEECCCHHHHHHHCCCCCCCHHHCCCCCC RNIYVHDNEISGYGAKPNGYLITDIINAYVLTHGAMPGILYDGLGELLANNGTAAYLGLR CEEEEECCCCCCCCCCCCCEEHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCEEEEEHC EMPFAADGSDNVCMQNNGDVSMGQLYSNSNTDMSIADVLYEKTQTNLLKCAQVSLPVHTV CCCCCCCCCCCEEEECCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHEECCCEEEE TFGEQIFGCGVDDDTAGCDGGNLIGGGGTIGDGDGGIIGDGDQALCDSTASGVNWNALAK EECCHHEECCCCCCCCCCCCCCEECCCCCCCCCCCCEECCCCHHHHCCCCCCCCCCEEEC ANCPKLSDYGLFADETDPTQNANGGMPYDLNTQLFTDYASKYRFVFMPDGTKAQYSENEA CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCEEEEEECCCCCCCCCCCCC FDFPVGTVISKTFALPADTSKRGIANEDLIETRLLIKRASGWTALPYVWNAQKSDAVLTK CCCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHEECCCCEECCEEECCCCCCEEEEC PGAIQAKTVMHKGEAKTFDYVVPSINQCKQCHQFKAEGDEFPRFVPIGPKARFLNGDFAY CCCCEEHHEEECCCCCEEEEECCCHHHHHHHHHHHCCCCCCCCEEECCCCCEEECCCEEE ADATVNQLSRWQSAGILEGLPELSSVPKVPAFHDGDEAGLAALDDASLMQTAKGYLDINC CHHHHHHHHHHHHCCHHHCCHHHHCCCCCCCCCCCCCCCEEEECCHHHHHHCCCCEEEEE AHCHRPEGNASNTGLKLEYWRGYGDDNGYSHGTCKQPVAYGGGSLGYDVVPTKPDSSIMH HCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCHHCCCCCCCCCEECCCCCCCEEE FRMASTEPGDRMPEIGRSLAHEEGVALIHEWIKRLPAAACSN EEECCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHCCHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA