| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119775243
Identifier: 119775243
GI number: 119775243
Start: 2551562
End: 2552251
Strand: Reverse
Name: 119775243
Synonym: Sama_2108
Alternate gene names: NA
Gene position: 2552251-2551562 (Counterclockwise)
Preceding gene: 119775246
Following gene: 119775242
Centisome position: 59.27
GC content: 52.03
Gene sequence:
>690_bases ATGACTGAGTTTTGGCACAATCTGTGGGTTAGTATCGACTGGCACTTCACCTTCGCCGATGGGGTGGCGATAGTATTGCT GTTGATTTGGTTGTGGATTATCTGGCCCAAAGACGACCTTATCGGCCTGCTGGCAAACAAGGAGCGGCAATTAAGGGCGC TCTTATCCCTCAGCGCCATCATGGGGCTCTGGCTTTTTAATGCCGGTGTTCATGGCTTACTGCAGTTGCACTTCTTGGGA CTGGTTACTCTGATGCTGATGTTTTCATGGCGTCTTGCCTCTGTACTCGCGCTGCTGCCCTGCGCCTTTTACTGCCTTGT GGTGTTAAAACAGCCCTGGCTCTTTGGGGCCTATGCCCTGATGGGGGTATGTCTGCCACTGTATCTGGCGTTTGTTATCC ATAATCGCGGCTTTTATTGGTTGCCTAACAATGTGTTTGTGCTGATTTTTGTCGCTGGCTTTTTCAACGCCGGGGTGTCT CAGGTCAGTCATGAGGGGTTTTGGTCGCTGTGGCTGTGGGCGTCAGATATGCAGCCAGCGGAGGTGCTGTGGCAGGATTA TCTTTCTCTATCGGTGCTTATGGTGTTTCCCGAGGCCTTGCTCAATGGTATGGCCGTTACCCTGCTGGTGGTATATCGTC CCCAATGGCTCAGTGATTACTCCGACCGTTACTATCTGTGGCGCAAGTGA
Upstream 100 bases:
>100_bases GGGCGCTGGTTTTGAATAACACGGTTTTAATTCCCCAAAAATCGGTGATAATCACTGTGATCAAGAGTAACCATATTCAC CCGGGAATCAATGCTTTTCC
Downstream 100 bases:
>100_bases TCTTCCAGTGAGAGCCATACGGCGCATTTGACCTGGCTCGCTCCTTTTAAAGCTTCACTTGACAAGCCTGGATGAAGTCA GCATCTTGAAGCGCCTAACC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 229; Mature: 228
Protein sequence:
>229_residues MTEFWHNLWVSIDWHFTFADGVAIVLLLIWLWIIWPKDDLIGLLANKERQLRALLSLSAIMGLWLFNAGVHGLLQLHFLG LVTLMLMFSWRLASVLALLPCAFYCLVVLKQPWLFGAYALMGVCLPLYLAFVIHNRGFYWLPNNVFVLIFVAGFFNAGVS QVSHEGFWSLWLWASDMQPAEVLWQDYLSLSVLMVFPEALLNGMAVTLLVVYRPQWLSDYSDRYYLWRK
Sequences:
>Translated_229_residues MTEFWHNLWVSIDWHFTFADGVAIVLLLIWLWIIWPKDDLIGLLANKERQLRALLSLSAIMGLWLFNAGVHGLLQLHFLG LVTLMLMFSWRLASVLALLPCAFYCLVVLKQPWLFGAYALMGVCLPLYLAFVIHNRGFYWLPNNVFVLIFVAGFFNAGVS QVSHEGFWSLWLWASDMQPAEVLWQDYLSLSVLMVFPEALLNGMAVTLLVVYRPQWLSDYSDRYYLWRK >Mature_228_residues TEFWHNLWVSIDWHFTFADGVAIVLLLIWLWIIWPKDDLIGLLANKERQLRALLSLSAIMGLWLFNAGVHGLLQLHFLGL VTLMLMFSWRLASVLALLPCAFYCLVVLKQPWLFGAYALMGVCLPLYLAFVIHNRGFYWLPNNVFVLIFVAGFFNAGVSQ VSHEGFWSLWLWASDMQPAEVLWQDYLSLSVLMVFPEALLNGMAVTLLVVYRPQWLSDYSDRYYLWRK
Specific function: Unknown
COG id: COG3235
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26625; Mature: 26494
Theoretical pI: Translated: 6.78; Mature: 6.78
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTEFWHNLWVSIDWHFTFADGVAIVLLLIWLWIIWPKDDLIGLLANKERQLRALLSLSAI CCCHHEEEEEEEEEEEEHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHH MGLWLFNAGVHGLLQLHFLGLVTLMLMFSWRLASVLALLPCAFYCLVVLKQPWLFGAYAL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH MGVCLPLYLAFVIHNRGFYWLPNNVFVLIFVAGFFNAGVSQVSHEGFWSLWLWASDMQPA HHHHHHHHHHHHHHCCCEEECCCCCEEHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHH EVLWQDYLSLSVLMVFPEALLNGMAVTLLVVYRPQWLSDYSDRYYLWRK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCEEEECC >Mature Secondary Structure TEFWHNLWVSIDWHFTFADGVAIVLLLIWLWIIWPKDDLIGLLANKERQLRALLSLSAI CCHHEEEEEEEEEEEEHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHH MGLWLFNAGVHGLLQLHFLGLVTLMLMFSWRLASVLALLPCAFYCLVVLKQPWLFGAYAL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH MGVCLPLYLAFVIHNRGFYWLPNNVFVLIFVAGFFNAGVSQVSHEGFWSLWLWASDMQPA HHHHHHHHHHHHHHCCCEEECCCCCEEHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHH EVLWQDYLSLSVLMVFPEALLNGMAVTLLVVYRPQWLSDYSDRYYLWRK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA