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The map label for this gene is dinF [C]

Identifier: 119775246

GI number: 119775246

Start: 2553180

End: 2554697

Strand: Reverse

Name: dinF [C]

Synonym: Sama_2111

Alternate gene names: 119775246

Gene position: 2554697-2553180 (Counterclockwise)

Preceding gene: 119775247

Following gene: 119775243

Centisome position: 59.33

GC content: 54.74

Gene sequence:

>1518_bases
ATGACCCAAGCTAAATTTGTTGAAGGGCCGATACTGCGCCACATATTGGTGATGAGCTCCACCGCTGCGGTGGGCATTTC
GGCACTGTTTTTGGTGGACTTGCTGGATATCTTCTTTCTGAGCTTACTCGGGGAAGCGGAGCTTGCCGCGGCCGTGGGAT
ACGCAGGTACCATTTCATTTTTCACCACGTCCATCGGTATTGGCTTATCTATTGCGCTGGGGGCACAGGTGTCCCGTGCC
ATTGGCGCAAGGGAAATCGACAACGCCAAACGGCTGCTGATGAGCTCGCTTCTGGTGACCCTGGCAGTCTCCTCCCTGGT
ATCGTTGCTCGTATCGCTGAATATCCCAGCACTGCTGACACTGGTGGGCGCCACCGGACAAACGGCAGAGCTTGCCGCGG
ACTATCTTTATATTCTGGTGCCCTCGCTGCCTTTTATCTGCCTTGCCATGGCCCTTGGCGCTGCACTCAGAGCGGTAGGG
GATGCCAAGCTCTCTATGGTATCGACTCTGGTGGGGGGCGGCGTCAATCTGGTACTCGATCCCATATTGATTTTTGTGCT
TGCCATGGGCATTGAAGGGGCTGCGGTGGCCTCTGTGCTGGCGCGTTTATCAGTGATGTTGGTGGCCGGACGCGGTGTGT
TTGTGAAACACGGGCTGGGCAGTAAACCCACACGCGATGCTTTTGTTGGCGATTTGAAACCCATTTTCGCCATTGCCGGA
CCGGCCATGATCACCAATGTGGCAACCCCCATCGGAAACGGCTTTATGACCCGCGCCATCGCTGAATTTGGCGACGCCTA
CGTGGCAGGATGGGCCGTGCTCGGGCGTCTTACCCCCGTGGCTTTCGGGATGATATTTGCACTTTCAGGCGCCATAGGCC
CCATCGTTGGACAGAATTTTGGTGCCCGGCGCTACGACAGGCTCAGGGATTGTTTAACCCAATCACTGTTGTTTTGTACT
GTTTATGTGGTGGGTATGGCGCTGGTGCTGTTTCTGGCTCAGGACCTGATAGTCAGTGCCTTTGATCTTAAAGGTGATTC
GGCTGAATTTATCGGCTTTTTCCTCACCTACATCGCCGTGTTCTTTGTGTTTTCCGGGGCACTCTTTGTCGCCAATGCAT
CGTTCAACAACCTGGGTAAAGCCAAGTATTCCACGGTGTTTAATGTGGGCAAGGCGACACTGGGGACCTTGCCCTTTATC
TGGCTAGGTGCCCAATACGGCGGCGTATACGGTGTGCTTATCGGGCAGGTGTTGGGTTCAGTGCTGTTTGGTGTTGCCGG
TGTCTATACCGCCTATCGTCTGGTCGCCTCCTTTGAAAGTGACCGTAATGCCACAAAGGAAGCGGCCGACGAAGAGGTGG
TGCCTGCCAGTTCCAATCCCTTGTCGTCATCCTTTGTGCAGATGGCGACGCACACCGAAGAGAAGGATTGCATAGGCGCC
CAGGAGGCAACAGAGTTTTTGGTTAAGCCTGAGATCTGCCCATCTGAAGCGGGCGCAGTACCGAAAGATAAAGTTTGA

Upstream 100 bases:

>100_bases
GACGTTGCAGTAACTGTTTGAAAACCGGTCATGATCAAGACGCCGAATACTGCAATAAGTGTGGCAGCGAGCTGCAAAAA
GAGCCGTAACAGGACCCATA

Downstream 100 bases:

>100_bases
TAGCCCTGGTCAAGGTGTAAATGGCATAAAAAAGGCTCCGCAGAGGAGCCTCTTTTATTTGGCAAGATGCTGTAACGTGC
CGGGATTTAAATCATACTGG

Product: MATE efflux family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 505; Mature: 504

Protein sequence:

>505_residues
MTQAKFVEGPILRHILVMSSTAAVGISALFLVDLLDIFFLSLLGEAELAAAVGYAGTISFFTTSIGIGLSIALGAQVSRA
IGAREIDNAKRLLMSSLLVTLAVSSLVSLLVSLNIPALLTLVGATGQTAELAADYLYILVPSLPFICLAMALGAALRAVG
DAKLSMVSTLVGGGVNLVLDPILIFVLAMGIEGAAVASVLARLSVMLVAGRGVFVKHGLGSKPTRDAFVGDLKPIFAIAG
PAMITNVATPIGNGFMTRAIAEFGDAYVAGWAVLGRLTPVAFGMIFALSGAIGPIVGQNFGARRYDRLRDCLTQSLLFCT
VYVVGMALVLFLAQDLIVSAFDLKGDSAEFIGFFLTYIAVFFVFSGALFVANASFNNLGKAKYSTVFNVGKATLGTLPFI
WLGAQYGGVYGVLIGQVLGSVLFGVAGVYTAYRLVASFESDRNATKEAADEEVVPASSNPLSSSFVQMATHTEEKDCIGA
QEATEFLVKPEICPSEAGAVPKDKV

Sequences:

>Translated_505_residues
MTQAKFVEGPILRHILVMSSTAAVGISALFLVDLLDIFFLSLLGEAELAAAVGYAGTISFFTTSIGIGLSIALGAQVSRA
IGAREIDNAKRLLMSSLLVTLAVSSLVSLLVSLNIPALLTLVGATGQTAELAADYLYILVPSLPFICLAMALGAALRAVG
DAKLSMVSTLVGGGVNLVLDPILIFVLAMGIEGAAVASVLARLSVMLVAGRGVFVKHGLGSKPTRDAFVGDLKPIFAIAG
PAMITNVATPIGNGFMTRAIAEFGDAYVAGWAVLGRLTPVAFGMIFALSGAIGPIVGQNFGARRYDRLRDCLTQSLLFCT
VYVVGMALVLFLAQDLIVSAFDLKGDSAEFIGFFLTYIAVFFVFSGALFVANASFNNLGKAKYSTVFNVGKATLGTLPFI
WLGAQYGGVYGVLIGQVLGSVLFGVAGVYTAYRLVASFESDRNATKEAADEEVVPASSNPLSSSFVQMATHTEEKDCIGA
QEATEFLVKPEICPSEAGAVPKDKV
>Mature_504_residues
TQAKFVEGPILRHILVMSSTAAVGISALFLVDLLDIFFLSLLGEAELAAAVGYAGTISFFTTSIGIGLSIALGAQVSRAI
GAREIDNAKRLLMSSLLVTLAVSSLVSLLVSLNIPALLTLVGATGQTAELAADYLYILVPSLPFICLAMALGAALRAVGD
AKLSMVSTLVGGGVNLVLDPILIFVLAMGIEGAAVASVLARLSVMLVAGRGVFVKHGLGSKPTRDAFVGDLKPIFAIAGP
AMITNVATPIGNGFMTRAIAEFGDAYVAGWAVLGRLTPVAFGMIFALSGAIGPIVGQNFGARRYDRLRDCLTQSLLFCTV
YVVGMALVLFLAQDLIVSAFDLKGDSAEFIGFFLTYIAVFFVFSGALFVANASFNNLGKAKYSTVFNVGKATLGTLPFIW
LGAQYGGVYGVLIGQVLGSVLFGVAGVYTAYRLVASFESDRNATKEAADEEVVPASSNPLSSSFVQMATHTEEKDCIGAQ
EATEFLVKPEICPSEAGAVPKDKV

Specific function: Unknown

COG id: COG0534

COG function: function code V; Na+-driven multidrug efflux pump

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002528
- InterPro:   IPR015522 [H]

Pfam domain/function: PF01554 MatE [H]

EC number: NA

Molecular weight: Translated: 52634; Mature: 52503

Theoretical pI: Translated: 5.21; Mature: 5.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQAKFVEGPILRHILVMSSTAAVGISALFLVDLLDIFFLSLLGEAELAAAVGYAGTISF
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCHHHHHH
FTTSIGIGLSIALGAQVSRAIGAREIDNAKRLLMSSLLVTLAVSSLVSLLVSLNIPALLT
HHHHHCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
LVGATGQTAELAADYLYILVPSLPFICLAMALGAALRAVGDAKLSMVSTLVGGGVNLVLD
HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
PILIFVLAMGIEGAAVASVLARLSVMLVAGRGVFVKHGLGSKPTRDAFVGDLKPIFAIAG
HHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHCCHHHHHHHC
PAMITNVATPIGNGFMTRAIAEFGDAYVAGWAVLGRLTPVAFGMIFALSGAIGPIVGQNF
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
GARRYDRLRDCLTQSLLFCTVYVVGMALVLFLAQDLIVSAFDLKGDSAEFIGFFLTYIAV
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
FFVFSGALFVANASFNNLGKAKYSTVFNVGKATLGTLPFIWLGAQYGGVYGVLIGQVLGS
HHHHCCHHEEEECCCCCCCHHHHHHHHHHHHHHHHCCCHHHCCCHHCCHHHHHHHHHHHH
VLFGVAGVYTAYRLVASFESDRNATKEAADEEVVPASSNPLSSSFVQMATHTEEKDCIGA
HHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCHHHHCCH
QEATEFLVKPEICPSEAGAVPKDKV
HHHHHHHCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
TQAKFVEGPILRHILVMSSTAAVGISALFLVDLLDIFFLSLLGEAELAAAVGYAGTISF
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCHHHHHH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HHHHHHHCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]