| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119775237
Identifier: 119775237
GI number: 119775237
Start: 2548010
End: 2548204
Strand: Reverse
Name: 119775237
Synonym: Sama_2102
Alternate gene names: NA
Gene position: 2548204-2548010 (Counterclockwise)
Preceding gene: 119775238
Following gene: 119775231
Centisome position: 59.18
GC content: 52.82
Gene sequence:
>195_bases ATGGATAAGTTACCGTCTCCCTGCGTTCGCAATTGCTGCCTGACCAATGAGGACATCTGTATGGGGTGTGGCCGCAGCTA TCAGGAAATCCTCGATTGGCATCAGGCCAATACACACCGGCAGCAGTTGATACTGGAAAAAGCCAAAGTACGGTTGGAGG AAATGGCTGAGATGCGTGGGCAGCCTCTGCGGTAA
Upstream 100 bases:
>100_bases ATGGCCAAAGCCATCGATACCATGACTATTGAGGCATCCAGTCTCACCATGGAAGTGCGCGAGCTGGAAAAAGCACATTA CTTTAAGAAGTTGGCCTGAA
Downstream 100 bases:
>100_bases ACTCCGCTGGATTTTATTCACTCAGAAATACCAGCTCACAAGTAAAAGCCCCGTCTTCAGTGCGGGGCTTTTTGGTTATT AGGCTGAGGTGTTTTTATCC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 64; Mature: 64
Protein sequence:
>64_residues MDKLPSPCVRNCCLTNEDICMGCGRSYQEILDWHQANTHRQQLILEKAKVRLEEMAEMRGQPLR
Sequences:
>Translated_64_residues MDKLPSPCVRNCCLTNEDICMGCGRSYQEILDWHQANTHRQQLILEKAKVRLEEMAEMRGQPLR >Mature_64_residues MDKLPSPCVRNCCLTNEDICMGCGRSYQEILDWHQANTHRQQLILEKAKVRLEEMAEMRGQPLR
Specific function: Unknown
COG id: COG3313
COG function: function code R; Predicted Fe-S protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 7489; Mature: 7489
Theoretical pI: Translated: 7.25; Mature: 7.25
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
7.8 %Cys (Translated Protein) 6.2 %Met (Translated Protein) 14.1 %Cys+Met (Translated Protein) 7.8 %Cys (Mature Protein) 6.2 %Met (Mature Protein) 14.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDKLPSPCVRNCCLTNEDICMGCGRSYQEILDWHQANTHRQQLILEKAKVRLEEMAEMRG CCCCCCHHHHHHCCCCCHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCC QPLR CCCC >Mature Secondary Structure MDKLPSPCVRNCCLTNEDICMGCGRSYQEILDWHQANTHRQQLILEKAKVRLEEMAEMRG CCCCCCHHHHHHCCCCCHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCC QPLR CCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA